STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4575Hypothetical protein-transmembrane region and signal peptide prediction. (347 aa)    
Predicted Functional Partners:
RB5401
Hypothetical protein.
  
     0.634
RB10354
Hypothetical protein-putative transmembrane protein.
  
     0.577
RB8718
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
  
     0.553
RB8246
Probable transmembrane protein; Best DB hits: BLAST: embl:CAB59607.1; (AL132662) putative transmembrane protein; E=6e-08 pir:G83504; hypothetical protein PA1139 [imported] - Pseudomonas; E=6e-06 pir:T35659; probable transmembrane protein - Streptomyces coelicolor; E=2e-05 COG: PA1139; COG2340 Uncharacterized protein with SCP/PR1 domains; E=6e-07.
   
    0.487
RB2654
Similar to membrane spanning export protein; PMID: 11206551 best DB hits: BLAST: gb:AAG54840.1; AE005229_3 (AE005229) putative membrane spanning; E=0.072 gb:AAG09745.1; AF232237_3 (AF232237) membrane fusion protein; E=0.23 pir:E70342; cation efflux system (czcB-like) - Aquifex aeolicus; E=0.43 PFAM: PF00364; Biotin-requiring enzyme; E=0.0014 PF00529; HlyD family secretion protein; E=2.9e-05.
  
     0.480
RB4571
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAD54003.1; AF088856_2 (AF088856) hypothetical protein; E=4e-20 embl:CAB69777.1; (AL137187) putative tetR-family transcriptional; E=6e-16 embl:CAB93063.1; (AL357432) putative transcriptional regulator; E=2e-14 COG: VCA0586; COG1309 Transcriptional regulator; E=1e-11 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=5.4e-11.
       0.475
RB4572
Hypothetical protein.
       0.475
RB10590
PMID: 10368134 best DB hits: BLAST: swissprot:P75920; MDOC_ECOLI GLUCANS BIOSYNTHESIS PROTEIN MDOC; E=2e-10 gb:AAG55793.1; AE005315_7 (AE005315) orf, hypothetical protein; E=2e-09 embl:CAB77037.1; (AJ245997) hypothetical protein [Xanthomonas; E=0.003 PFAM: PF00023; Ank repeat; E=1e-05.
  
     0.464
RB1216
Probable permease component of an ABC-transporter; PMID: 9403685 best DB hits: BLAST: pir:H70193; membrane spanning protein homolog - Lyme disease; E=6e-04 gb:AAD39630.1; AF033858_13 (AF033858) putative ABC transporter; E=0.074 pir:D69049; conserved hypothetical protein MTH1371 -; E=0.15 COG: BB0753; COG1277 Permease component of an ABC-transporter; E=5e-05.
  
     0.429
RB10473
Best DB hits: BLAST: pir:D71687; alkaline proteinase secretion protein apre (aprE) RP314; E=0.032 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=0.053 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=0.13 COG: RP314; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF01590; GAF domain; E=0.00029 PF00364; Biotin-requiring enzyme; E=0.0022.
  
     0.419
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.