STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4580Conserved hypothetical protein-putative membrane-associated HD-superfamily hydrolase; PMID: 8969508 best DB hits: BLAST: swissprot:P46344; YQFF_BACSU HYPOTHETICAL 79.2 KD PROTEIN IN; E=1e-58 ddbj:BAB05081.1; (AP001511) BH1362~unknown conserved protein; E=4e-54 pir:E72244; conserved hypothetical protein - Thermotoga maritima; E=1e-48 COG: BS_yqfF; COG1480 Predicted membrane-associated HD superfamily; E=1e-59 PFAM: PF01966; HD domain; E=5.3e-21. (794 aa)    
Predicted Functional Partners:
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.879
RB4582
phoH-like protein; PMID: 8444794 best DB hits: BLAST: swissprot:P46343; PHOL_BACSU PHOH-LIKE PROTEIN ----- pir:; E=1e-70 ddbj:BAB05080.1; (AP001511) phosphate starvation-induced protein; E=4e-69 embl:CAA12155.1; (AJ224829) ORF4 [Bacillus megaterium]; E=8e-69 COG: BS_phoH; COG1702 Phosphate starvation-inducible protein PhoH,; E=1e-71 ybeZ; COG1702 Phosphate starvation-inducible protein PhoH, predicted; E=4e-68 Rv2368c; COG1702 Phosphate starvation-inducible protein PhoH,; E=2e-65 PFAM: PF02562; PhoH-like protein; E=1.8e-133.
     
 0.810
RB4578
Hemolysin protein; PMID: 7968456 best DB hits: BLAST: gb:AAG20419.1; (AE005114) hemolysin protein; Hlp [Halobacterium; E=3e-25 pir:F72326; hemolysin-related protein - Thermotoga maritima (strain; E=9e-25 pir:H71299; probable hemolysin (tlyC) - syphilis spirochete -----; E=6e-23 COG: VNG2308G; COG1253 Uncharacterized CBS domain-containing proteins; E=3e-26 PFAM: PF00571; CBS domain; E=7e-06.
       0.806
asnB-2
Asparagine synthetase [glutamine-hydrolyzing] 1; PMID: 10498721 PMID: 8755891 best DB hits: BLAST: gb:AAF34252.1; AF168003_7 (AF168003) putative asparagine; E=1e-100 gb:AAF24002.1; (AF035937) WbpS [Pseudomonas aeruginosa]; E=9e-94 ddbj:BAA33606.1; (AB012956) probable asparagine synthetase; E=1e-89 COG: BS_asnB; COG0367 Asparagine synthase (glutamine-hydrolyzing); E=2e-86 PFAM: PF00310; Glutamine amidotransferases clas; E=5.6e-21 PF00733; Asparagine synthase; E=1.5e-51.
       0.570
recO
Probable DNA repair protein recO; Involved in DNA repair and RecF pathway recombination.
 
     0.557
cdS
Phosphatidate cytidylyltransferase; PMID: 2995358 PMID: 8557688 PMID: 9083091 best DB hits: BLAST: gb:AAB61972.1; (U60832) CDP-diglyceride synthetase [Haemophilus; E=2e-19 swissprot:P44937; CDSA_HAEIN PHOSPHATIDATE CYTIDYLYLTRANSFERASE; E=3e-19 gb:AAB61967.1; (U60831) CDP diglyceride synthetase [Haemophilus; E=3e-19 COG: HI0919; COG0575 CDP-diglyceride synthetase; E=2e-20 PFAM: PF01148; Phosphatidate cytidylyltransfe; E=5.6e-15.
       0.527
RB4576
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: BLAST: pir:T01022; hypothetical protein YUP8H12R.5 - Arabidopsis thaliana; E=0.028 pir:T01023; hypothetical protein YUP8H12R.6 - Arabidopsis thaliana; E=0.032 pir:T01021; hypothetical protein YUP8H12R.4 - Arabidopsis thaliana; E=0.036.
       0.434
psd-2
Phosphatidylserine decarboxylase precursor; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
  
     0.402
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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