STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recOProbable DNA repair protein recO; Involved in DNA repair and RecF pathway recombination. (276 aa)    
Predicted Functional Partners:
recR
Recombinant protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
 
 0.940
RB4582
phoH-like protein; PMID: 8444794 best DB hits: BLAST: swissprot:P46343; PHOL_BACSU PHOH-LIKE PROTEIN ----- pir:; E=1e-70 ddbj:BAB05080.1; (AP001511) phosphate starvation-induced protein; E=4e-69 embl:CAA12155.1; (AJ224829) ORF4 [Bacillus megaterium]; E=8e-69 COG: BS_phoH; COG1702 Phosphate starvation-inducible protein PhoH,; E=1e-71 ybeZ; COG1702 Phosphate starvation-inducible protein PhoH, predicted; E=4e-68 Rv2368c; COG1702 Phosphate starvation-inducible protein PhoH,; E=2e-65 PFAM: PF02562; PhoH-like protein; E=1.8e-133.
  
    0.860
RB4593
Hypothetical protein-transmembrane regio and signal peptide prediction.
       0.651
RB4595
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.651
RB4580
Conserved hypothetical protein-putative membrane-associated HD-superfamily hydrolase; PMID: 8969508 best DB hits: BLAST: swissprot:P46344; YQFF_BACSU HYPOTHETICAL 79.2 KD PROTEIN IN; E=1e-58 ddbj:BAB05081.1; (AP001511) BH1362~unknown conserved protein; E=4e-54 pir:E72244; conserved hypothetical protein - Thermotoga maritima; E=1e-48 COG: BS_yqfF; COG1480 Predicted membrane-associated HD superfamily; E=1e-59 PFAM: PF01966; HD domain; E=5.3e-21.
 
     0.557
ssb
Single-strand binding protein; PMID: 6270666 PMID: 6384214 best DB hits: BLAST: swissprot:O83101; SSB_TREPA SINGLE-STRAND BINDING PROTEIN (SSB); E=7e-23 embl:CAA76674.1; (Y17166) single strand DNA binding protein; E=1e-19 pir:B81310; single-strand DNA binding protein Cj1071 [imported] -; E=1e-19 COG: TP0062; COG0629 Single-stranded DNA-binding protein; E=7e-24 PFAM: PF00436; Single-strand binding protein family; E=1.7e-48.
   
 
 0.550
RB4590
Hypothetical protein.
       0.545
ruvC
Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
  
 0.544
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.499
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.492
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.