STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4714Conserved hypothetical protein; PMID: 97000351 best DB hits: BLAST: embl:CAB61595.1; (AL133210) hypothetical protein SCG11A.14; E=3e-96 gb:AAG57184.1; AE005439_3 (AE005439) orf, hypothetical protein; E=1e-69 swissprot:P33348; YEHL_ECOLI HYPOTHETICAL 42.4 KD PROTEIN IN; E=3e-69 COG: yehL; COG0714 MoxR-like ATPases; E=3e-70. (432 aa)    
Predicted Functional Partners:
RB4715
Best DB hits: BLAST: pir:T35548; hypothetical protein SC6G3.04 - Streptomyces coelicolor; E=1e-145 embl:CAB61596.1; (AL133210) hypothetical protein SCG11A.15; E=5e-93 swissprot:P33352; YEHP_ECOLI HYPOTHETICAL 42.1 KD PROTEIN IN; E=5e-27.
 
     0.951
RB4716
Best DB hits: BLAST: pir:T35549; hypothetical protein SC6G3.05 - Streptomyces coelicolor; E=4e-13.
       0.776
RB9588
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB62700.1; (AL133422) hypothetical protein SCM1.42c; E=7e-34 gb:AAF12648.1; AE001826_117 (AE001826) hypothetical protein; E=4e-33.
  
     0.679
RB9591
Best DB hits: BLAST: pir:T36867; hypothetical protein SCI51.04 - Streptomyces coelicolor; E=3e-50 pir:T36868; hypothetical protein SCI51.05c - Streptomyces coelicolor; E=7e-07 pir:D83072; conserved hypothetical protein PA4584 [imported] -; E=2e-05.
  
     0.651
RB9592
Best DB hits: BLAST: pir:T36868; hypothetical protein SCI51.05c - Streptomyces coelicolor; E=6e-54 swissprot:Q60312; Y002_METJA HYPOTHETICAL PROTEIN MJ0002 -----; E=1e-13 pir:T36867; hypothetical protein SCI51.04 - Streptomyces coelicolor; E=9e-07.
  
     0.651
RB4712
Conserved hypothetical protein; PMID: 97000351 best DB hits: BLAST: embl:CAB61593.1; (AL133210) hypothetical protein SCG11A.12; E=2e-59 pir:T35546; hypothetical protein SC6G3.02 - Streptomyces coelicolor; E=2e-36.
       0.642
RB4713
Conserved hypothetical protein; PMID: 97000351 best DB hits: BLAST: embl:CAB61594.1; (AL133210) hypothetical protein SCG11A.13; E=1e-63 pir:T35547; hypothetical protein SC6G3.03 - Streptomyces coelicolor; E=1e-25.
       0.642
kptA-2
RNA 2-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
  
     0.610
RB1597
Conserved hypothetical protein; PMID: 8037924 best DB hits: BLAST: swissprot:P30176; YBIA_ECOLI HYPOTHETICAL 18.7 KDA PROTEIN IN; E=3e-34 pir:A75416; conserved hypothetical protein - Deinococcus radiodurans; E=4e-05 pir:B83074; conserved hypothetical protein PA4580 [imported] -; E=1e-04 COG: ybiA; COG3236 Uncharacterized BCR; E=3e-35.
  
     0.606
rsr
60-kDa SS-A/Ro ribonucleoprotein homolog; PMID: 10567266 PMID: 10766734 best DB hits: BLAST: swissprot:Q9RUW8; RO60_DEIRA 60-KDA SS-ARO RIBONUCLEOPROTEIN; E=2e-17 gb:AAC53142.1; (U66843) Mus musculus 60kDa SS-ARo; E=1e-11 pir:T36919; hypothetical protein SCI7.23c - Streptomyces coelicolor; E=1e-11.
 
  
 0.604
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.