STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4744Best DB hits: BLAST: pir:A69220; conserved hypothetical protein MTH898 - Methanobacterium; E=6e-10 gb:AAK05956.1; AE006416_1 (AE006416) conserved hypothetical; E=8e-07 pir:A69233; conserved hypothetical protein MTH993 - Methanobacterium; E=3e-06 COG: MTH898; COG0589 Universal stress protein UspA and related; E=6e-11 PFAM: PF00582; Universal stress protein family; E=5.4e-13. (309 aa)    
Predicted Functional Partners:
RB4742
Conserved hypothetical protein; PMID: 7542800 best DB hits: BLAST: pir:H82491; conserved hypothetical protein VCA0159 [imported] -; E=2e-29 pir:G64029; hypothetical protein HI1426 - Haemophilus influenzae; E=1e-20 swissprot:P44195; YDAA_HAEIN HYPOTHETICAL PROTEIN HI1426; E=1e-20 COG: VCA0159; COG0589 Universal stress protein UspA and related; E=2e-30 PFAM: PF00582; Universal stress protein family; E=0.0026.
 
     0.801
RB4746
Hypothetical protein.
       0.773
RB4741
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.410
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.