STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4763PMID: 9784136 best DB hits: BLAST: pir:H71494; probable thiol-disulfide interchange protein dsbD; E=0.009 pir:H72034; thiol-disulfide interchange protein dsbD [imported] -; E=0.084 pir:G81503; thiol-disulfide interchange protein DSbD homolog CP1086; E=0.084 COG: CT595; COG0526 Thiol-disulfide isomerase and thioredoxins; E=8e-04. (195 aa)    
Predicted Functional Partners:
RB2680
PMID: 11953415 best DB hits: BLAST: gb:AAC45602.1; (U75949) suppressor for copper-sensitivity C; E=0.011 pir:S75747; hypothetical protein slr0565 - Synechocystis sp; E=0.032 ddbj:BAA20493.1; (AB004696) 27kDa outer membrane protein; E=0.11.
  
 
 0.555
RB4766
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.548
RB4769
Hypothetical protein.
       0.432
ccsA
PMID: 7610180 PMID: 8617725 best DB hits: BLAST: pir:D81040; cytochrome c-type biogenesis protein, probable NMB1803; E=2e-18 pir:B81986; probable membrane protein NMA0660 [imported] - Neisseria; E=2e-18 pir:H71862; probable cytochrome C-type biogenesis protein -; E=7e-17 COG: NMB1803; COG0755 Cytochrome c-type biogenesis protein (heme exporter; E=2e-19 APE2274; COG1138 Cytochrome c biogenesis factor; E=5e-04 NMB1804; COG1333 ResB protein required for cytochrome c biosynthesis; E=0.002 PFAM: PF02590; Uncharacterized ACR, COG1576; E=0.15 PF01578; Cytochrome C assembly protein; E=0.036.
     
 0.411
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.