STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4769Hypothetical protein. (490 aa)    
Predicted Functional Partners:
RB4766
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.594
RB4770
ABC transporter; Best DB hits: BLAST: ddbj:BAB06427.1; (AP001516) ABC transporter [Bacillus halodurans]; E=3e-69 pir:H69086; ABC transporter - Methanobacterium thermoautotrophicum; E=2e-66 pir:D83014; conserved hypothetical protein PA5065 [imported] -; E=6e-59 COG: BH2708; COG0661 Predicted unusual protein kinase; E=3e-70.
       0.447
RB4763
PMID: 9784136 best DB hits: BLAST: pir:H71494; probable thiol-disulfide interchange protein dsbD; E=0.009 pir:H72034; thiol-disulfide interchange protein dsbD [imported] -; E=0.084 pir:G81503; thiol-disulfide interchange protein DSbD homolog CP1086; E=0.084 COG: CT595; COG0526 Thiol-disulfide isomerase and thioredoxins; E=8e-04.
       0.432
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.