STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4772Hypothetical protein. (43 aa)    
Predicted Functional Partners:
RB4773
Hypothetical protein.
       0.773
RB4775
Hypothetical 48K protein-putative transposase; Required for the transposition of the insertion element.
       0.773
RB4777
Hypothetical protein.
       0.601
RB4778
Hypothetical protein-transmembrane prediction.
       0.601
RB4771
Hypothetical protein.
       0.572
RB4781
Probable protein hesB; PMID: 99231861 best DB hits: BLAST: swissprot:P18501; HESB_ANASP HESB PROTEIN ----- pir: S11901; E=9e-08 swissprot:P46051; HEB1_ANAVA HESB PROTEIN, HETEROCYST -----; E=1e-07 gb:AAF82645.1; AF167538_12 (AF167538) HesB [Trichodesmium sp; E=2e-07 COG: NMB1381; COG0316 Uncharacterized ACR; E=5e-07 PFAM: PF01521; HesB-like domain; E=4.9e-21; Belongs to the HesB/IscA family.
       0.475
RB4770
ABC transporter; Best DB hits: BLAST: ddbj:BAB06427.1; (AP001516) ABC transporter [Bacillus halodurans]; E=3e-69 pir:H69086; ABC transporter - Methanobacterium thermoautotrophicum; E=2e-66 pir:D83014; conserved hypothetical protein PA5065 [imported] -; E=6e-59 COG: BH2708; COG0661 Predicted unusual protein kinase; E=3e-70.
       0.430
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.