STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4798Hypothetical protein-transmembrane prediction. (279 aa)    
Predicted Functional Partners:
RB505
Similar to myosin heavy chain; PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19.
  
     0.736
RB10149
Best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26.
  
     0.730
RB6431
Hypothetical protein.
  
     0.673
RB1661
Hypothetical protein; PMID: 96163873 best DB hits: BLAST: embl:CAA60685.1; (X87241) homologue of Drosophila Fat protein [Homo; E=3e-18 embl:CAB65271.1; (AJ250768) mouse fat 1 cadherin [Mus musculus]; E=1e-17 PFAM: PF00054; Laminin G domain; E=0.3 PF00354; Pentaxin family; E=3.9e-10 PF00059; Lectin C-type domain; E=0.00071.
  
     0.644
RB3524
Conserved hypothetical protein-possibly heme/hemopexin utilization protein huxB; PMID: 7751272 best DB hits: BLAST: pir:C83558; hypothetical protein PA0692 [imported] - Pseudomonas; E=1e-15 swissprot:P45356; HXB2_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B; E=2e-05 swissprot:P44601; HXB1_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B; E=3e-05 COG: PA0692; COG2831 Hemolysin activation/secretion protein; E=1e-16.
  
     0.617
RB502
Hypothetical protein-signal peptide prediction; PMID: 11474104.
  
     0.604
RB2091
PMID: 10086841 best DB hits: BLAST: ddbj:BAB05636.1; (AP001513) chitooligosaccharide deacetylase; E=0.003 ddbj:BAB05021.1; (AP001511) BH1302~unknown conserved protein; E=0.004 pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.004 COG: BH1917; COG0726 Predicted xylanase/chitin deacetylase; E=3e-04 PFAM: PF01522; Polysaccharide deacetylase; E=0.055.
  
     0.583
RB8835
Probable secreted alkaline phosphatase (fragment); Best DB hits: BLAST: embl:CAB99170.1; (AL390188) putative secreted alkaline; E=0.003 embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=0.004 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=0.10 PFAM: PF02908; Purple acid phosphatase, N-term; E=0.89 PF00041; Fibronectin type III domain; E=0.42.
  
     0.579
RB4799
Best DB hits: BLAST: pir:C70893; hypothetical protein Rv1069c - Mycobacterium; E=3e-88.
       0.526
RB4800
Hypothetical protein.
       0.526
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.