STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4875Hypothetical protein-transmembrane prediction. (395 aa)    
Predicted Functional Partners:
RB4870
PMID: 10988064 best DB hits: BLAST: gb:AAG10499.1; AF279106_61 (AF279106) predicted cation efflux system; E=5e-95 pir:A83186; probable RND efflux transporter PA3676 [imported] -; E=2e-75 pir:F82829; acriflavin resistance protein XF0243 [imported] - Xylella; E=1e-71 COG: PA3676; COG0841 Cation/multidrug efflux pump; E=2e-76 PFAM: PF00873; AcrB/AcrD/AcrF family; E=6.1e-05; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.528
RB4872
Probable membrane protein; PMID: 11206551 best DB hits: BLAST: gb:AAG58620.1; AE005573_3 (AE005573) putative membrane protein; E=9e-11 swissprot:P37626; YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN; E=1e-10 pir:G83220; hypothetical protein PA3402 [imported] - Pseudomonas; E=1e-09 COG: yhiI; COG0845 Membrane-fusion protein; E=9e-12 PA2836; COG1566 Multidrug resistance efflux pump; E=2e-04 XF2084; COG0845 Membrane-fusion protein; E=3e-04 PFAM: PF00364; Biotin-requiring enzyme; E=0.14 PF01173; Uncharacterized protein family; E=0.095 PF00529; HlyD family secretion protein; E=2.7e-07.
       0.528
RB4873
Probable regulator amrR; PMID: 10049252 best DB hits: BLAST: gb:AAC27752.1; (AF072887) regulator AmrR [Burkholderia; E=2e-04 pir:H83274; probable transcriptional regulator PA2957 [imported] -; E=5e-04 swissprot:Q59431; UIDR_ECOLI UID OPERON REPRESSOR (GUS OPERON; E=0.002 COG: PA2957; COG1309 Transcriptional regulator; E=5e-05 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=1.1e-10.
       0.528
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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