STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB4880PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=4e-65 gb:AAK03766.1; (AE006204) unknown [Pasteurella multocida]; E=8e-34 gb:AAG58881.1; AE005599_13 (AE005599) putative sulfatase; E=9e-33 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=2e-33 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=6e-10 VNG1337C; COG3119 Arylsulfatase A and related enzymes; E=7e-08 PFAM: PF00884; Sulfatase; E=2.4e-75. (534 aa)    
Predicted Functional Partners:
RB4879
Nodulin-26; PMID: 3822816 PMID: 1390682 best DB hits: BLAST: pir:T05028; nodulin-26-like protein F13C5.80 - Arabidopsis thaliana; E=2e-47 pir:S01444; nodulin-26 precursor - soybean; E=4e-47 swissprot:P08995; NO26_SOYBN NODULIN-26 (N-26) ----- embl:; E=5e-47 COG: PA4034; COG0580 Glycerol uptake facilitator and related permeases; E=2e-25 PFAM: PF00230; Major intrinsic protein; E=6.6e-52.
       0.497
RB4877
lysine--tRNA ligase genX; PMID: 1761227 best DB hits: BLAST: swissprot:Q9ZJ12; SYK3_SALTY PUTATIVE LYSYL-TRNA SYNTHETASE; E=1e-57 swissprot:P03812; SYK3_ECOLI PUTATIVE LYSYL-TRNA SYNTHETASE; E=2e-57 pir:S56383; lysine--tRNA ligase (EC 6.1.1.6) genX - Escherichia coli; E=2e-57 COG: yjeA; COG2269 Truncated, possibly inactive Class II lysyl-tRNA; E=2e-58 DR0372; COG1190 Lysyl-tRNA synthetase class II; E=2e-29 PFAM: PF00152; tRNA synthetases class II (D, K a; E=8.7e-07.
       0.491
RB4881
Conserved hypothetical protein; PMID: 11214968 best DB hits: BLAST: embl:CAB61226.1; (Y17305) hypothetical protein [Bacillus; E=0.092.
       0.437
RB4883
Hypothetical protein.
       0.437
RB736
Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019.
 
      0.434
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.