RB4993 protein (Rhodopirellula baltica) - STRING interaction network

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RB4993

Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669. (361 aa)

Predicted Functional Partners:

RB3871

0.710

RB4811

0.709

RB9810

0.709

RB9411

0.708

RB12303

0.644

RB8071

0.616

RB9508

0.590

RB3804

0.578

RB8866

0.574

RB9439

0.570

Your Current Organism:

Rhodopirellula baltica

NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RB12303	RB3804	Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.	Hypothetical protein-signal peptide and transmembrane prediction.	0.555
RB12303	RB4993	Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	0.644
RB12303	RB8866	Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.	Best DB hits: BLAST: pir:T44513; hypothetical protein 5P [imported] - Plesiomonas; E=3e-21 gb:AAG17422.1; AF285971_6 (AF285971) WbgV [Shigella sonnei]; E=4e-21 gb:AAA84874.1; (U34305) ORF6; Method: conceptual translation; E=4e-14.	0.486
RB12303	RB9439	Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.	Best DB hits: BLAST: embl:CAB58265.1; (AL121849) putative multi-domain protein; E=6e-33 embl:CAB45032.1; (AL078635) putative large multi-functional; E=1e-32 pir:T36423; probable large, multifunctional secreted protein -; E=1e-06 PFAM: PF00034; Cytochrome c; E=0.023.	0.400
RB12303	RB9508	Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.	Best DB hits: BLAST: pir:S77346; hypothetical protein slr1841 - Synechocystis sp. (strain; E=0.64; Belongs to the OprB family.	0.482
RB3804	RB12303	Hypothetical protein-signal peptide and transmembrane prediction.	Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.	0.555
RB3804	RB4993	Hypothetical protein-signal peptide and transmembrane prediction.	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	0.578
RB3804	RB8866	Hypothetical protein-signal peptide and transmembrane prediction.	Best DB hits: BLAST: pir:T44513; hypothetical protein 5P [imported] - Plesiomonas; E=3e-21 gb:AAG17422.1; AF285971_6 (AF285971) WbgV [Shigella sonnei]; E=4e-21 gb:AAA84874.1; (U34305) ORF6; Method: conceptual translation; E=4e-14.	0.656
RB3804	RB9439	Hypothetical protein-signal peptide and transmembrane prediction.	Best DB hits: BLAST: embl:CAB58265.1; (AL121849) putative multi-domain protein; E=6e-33 embl:CAB45032.1; (AL078635) putative large multi-functional; E=1e-32 pir:T36423; probable large, multifunctional secreted protein -; E=1e-06 PFAM: PF00034; Cytochrome c; E=0.023.	0.677
RB3871	RB4993	Probable transposase; PMID: 10762236 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=8e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=1e-12 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=3e-10 COG: BH0691; COG3385 Predicted transposase; E=2e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08.	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	0.710
RB4811	RB4993	Probable transposase; PMID: 10531208 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=2e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=3e-13 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=4e-10 COG: BH0691; COG3385 Predicted transposase; E=4e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08.	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	0.709
RB4993	RB12303	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.	0.644
RB4993	RB3804	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Hypothetical protein-signal peptide and transmembrane prediction.	0.578
RB4993	RB3871	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Probable transposase; PMID: 10762236 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=8e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=1e-12 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=3e-10 COG: BH0691; COG3385 Predicted transposase; E=2e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08.	0.710
RB4993	RB4811	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Probable transposase; PMID: 10531208 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=2e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=3e-13 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=4e-10 COG: BH0691; COG3385 Predicted transposase; E=4e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08.	0.709
RB4993	RB8071	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Similar to spectrin alpha chain; PMID: 2808524 PMID: 8276898 PMID: 2497103 best DB hits: BLAST: swissprot:P13395; SPCA_DROME SPECTRIN ALPHA CHAIN ----- pir:; E=0.46 gb:AAF47569.1; (AE003472) alpha-Spec gene product [alt 2]; E=0.46.	0.616
RB4993	RB8866	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Best DB hits: BLAST: pir:T44513; hypothetical protein 5P [imported] - Plesiomonas; E=3e-21 gb:AAG17422.1; AF285971_6 (AF285971) WbgV [Shigella sonnei]; E=4e-21 gb:AAA84874.1; (U34305) ORF6; Method: conceptual translation; E=4e-14.	0.574
RB4993	RB9411	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Probable transposase; PMID: 20002534 PMID: 20225833 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=2e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=3e-13 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=4e-10 COG: BH0691; COG3385 Predicted transposase; E=4e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08.	0.708
RB4993	RB9439	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Best DB hits: BLAST: embl:CAB58265.1; (AL121849) putative multi-domain protein; E=6e-33 embl:CAB45032.1; (AL078635) putative large multi-functional; E=1e-32 pir:T36423; probable large, multifunctional secreted protein -; E=1e-06 PFAM: PF00034; Cytochrome c; E=0.023.	0.570
RB4993	RB9508	Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11679669.	Best DB hits: BLAST: pir:S77346; hypothetical protein slr1841 - Synechocystis sp. (strain; E=0.64; Belongs to the OprB family.	0.590

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