STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5008Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF00150; Cellulase (glycosyl hydrolase famil; E=0.26; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (395 aa)    
Predicted Functional Partners:
axeA
Probable acetyl xylan esterase AxeA; PMID: 10473406 PMID: 9274014 best DB hits: BLAST: pir:T05414; protein kinase homolog F28A23.20 - Arabidopsis thaliana; E=9e-17 gb:AAG36766.1; AF180369_1 (AF180369) acetyl xylan esterase AxeA; E=3e-14 pir:T47558; hypothetical protein F8J2.180 - Arabidopsis thaliana; E=5e-13.
 
     0.839
RB4606
PMID: 9371463 best DB hits: BLAST: pir:D69100; probable protein disulfide-isomerase (EC 5.3.4.1); E=5e-08 gb:AAG20098.1; (AE005089) Vng1905c [Halobacterium sp. NRC-1]; E=1e-04 pir:B70456; thioredoxin - Aquifex aeolicus ----- gb:; E=6e-04 COG: MTH1745; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-09 VNG1905C; COG1331 Highly conserved protein containing a thioredoxin; E=1e-05 aq_1811; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-05.
   
 
 0.819
trx-2
Best DB hits: BLAST: pir:D69100; probable protein disulfide-isomerase (EC 5.3.4.1); E=7e-07 gb:AAG20098.1; (AE005089) Vng1905c [Halobacterium sp. NRC-1]; E=9e-05 gb:AAB89512.1; (AE000983) conserved hypothetical protein; E=1e-04 COG: MTH1745; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-08 VNG1905C; COG1331 Highly conserved protein containing a thioredoxin; E=9e-06 VCA0647; COG3350 Uncharacterized ACR; E=0.009.
   
 
 0.819
RB11033
PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=2e-16 embl:CAC09551.1; (AL442120) putative ABC transport system; E=2e-11 embl:CAB62838.1; (AL133443) hypothetical protein L5529.07; E=3e-04 COG: AF1017; COG0577 Predicted permease; E=3e-05 PFAM: PF02687; Predicted permease; E=2.3e-12.
  
     0.705
cft
Probable cycloinulo-oligosaccharide fructanotransferase; PMID: 11157277 best DB hits: BLAST: gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=2e-04 pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=5e-04 pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.030 PFAM: PF02012; BNR repeat; E=0.23.
  
     0.658
glnB-3
Nitrogen regulatory protein P-II; PMID: 1702507 best DB hits: BLAST: pir:A72380; nitrogen regulatory protein P-II - Thermotoga maritima; E=4e-21 swissprot:P21193; GLNB_AZOBR NITROGEN REGULATORY PROTEIN P-II; E=8e-17 embl:CAA63238.1; (X92496) PII-like protein Pz [Azospirillum; E=1e-16 COG: TM0403; COG0347 Nitrogen regulatory protein PII; E=4e-22 PFAM: PF00543; Nitrogen regulatory protein P-II; E=2.7e-27.
       0.598
RB11027
Probable ABC transport system integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1; (AL442120) putative ABC transport system; E=1e-06 pir:G70821; hypothetical protein Rv0987 - Mycobacterium tuberculosis; E=0.005 ddbj:BAB06840.1; (AP001517) BH3121~unknown conserved protein; E=0.011 COG: Rv0987_1; COG0577 Predicted permease; E=8e-04 PFAM: PF02687; Predicted permease; E=3.3e-13.
  
     0.580
RB12630
Hypothetical protein-signal peptide prediction.
  
     0.550
RB5011
Similar to lichenase; PMID: 9324248 best DB hits: BLAST: gb:AAD04192.1; (U63813) lichenase [Orpinomyces sp. PC-2]; E=0.16 pir:A36910; xylanase, beta(1,3-1,4)-glucanase - Ruminococcus; E=0.25 swissprot:Q53317; XYND_RUMFL XYLANASEBETA-GLUCANASE PRECURSOR; E=0.25.
     
 0.539
RB11015
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
  
     0.526
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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