STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5060Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:E69772; hypothetical protein ydbS - Bacillus subtilis -----; E=7e-11 ddbj:BAB05439.1; (AP001512) BH1720~unknown conserved protein; E=6e-07 pir:T36081; probable integral membrane protein - Streptomyces; E=6e-06 COG: BS_ydbS; COG3402 Uncharacterized protein; E=7e-12. (197 aa)    
Predicted Functional Partners:
RB5057
Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:F69772; hypothetical protein ydbT - Bacillus subtilis -----; E=6e-14 ddbj:BAB05440.1; (AP001512) BH1721~unknown conserved protein; E=7e-13 embl:CAA76218.1; (Y16431) hypothetical protein [Staphylococcus; E=9e-09 COG: BS_ydbS; COG3402 Uncharacterized protein; E=4e-07.
 
  
 0.973
RB5061
Hypothetical protein.
       0.655
RB5062
Hypothetical protein.
       0.655
uup
ABC transporter ATP-binding protein uup-1; PMID: 91035372 PMID: 88240299 best DB hits: BLAST: pir:B82536; ABC transporter ATP-binding protein XF2617 [imported] -; E=1e-130 swissprot:Q57242; UUP1_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN; E=1e-130 gb:AAK02961.1; (AE006126) Uup1 [Pasteurella multocida]; E=1e-129 COG: XF2617; COG0488 ATPase components of ABC transporters with; E=1e-131 uup; COG0488 ATPase components of ABC transporters with duplicated; E=1e-127 VC1486; COG0488 ATPase components of ABC transporters with; E=1e-126 PFAM: PF00006; ATP synthase alpha/beta famil; E=0.076 PF0000 [...]
       0.623
RB5056
ABC transporter, ATP-binding protein; PMID: 10567266 best DB hits: BLAST: pir:S77512; ABC-type transport protein slr1901 - Synechocystis sp; E=3e-67 pir:F75377; ABC transporter, ATP-binding protein - Deinococcus; E=6e-67 pir:G75548; ABC transporter, ATP-binding protein - Deinococcus; E=1e-50 COG: slr1901; COG1131 ABC-type multidrug transport system, ATPase; E=3e-68 BH1054_2; COG0842 Permease component of an ABC-transporter; E=8e-31 PH0820; COG1131 ABC-type multidrug transport system, ATPase; E=1e-30 PFAM: PF00448; SRP54-type protein, GTPase do; E=0.012 PF02223; Thymidylate kinase; E=0. [...]
       0.623
RB12236
Hypothetical protein-transmembrane prediction.
  
  
 0.524
RB6958
Conserved hypothetical protein; PMID: 11016950 best DB hits: BLAST: gb:AAG19686.1; (AE005056) Vng1353c [Halobacterium sp. NRC-1]; E=0.009 gb:AAG19687.1; (AE005056) Vng1355h [Halobacterium sp. NRC-1]; E=0.034 ddbj:BAB05440.1; (AP001512) BH1721~unknown conserved protein; E=0.049 COG: VNG1355H; COG3402 Uncharacterized protein; E=0.003.
  
  
 0.524
RB5064
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.491
RB5066
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAF53435.1; (AE003646) ck gene product [Drosophila melanogaster]; E=0.86.
       0.484
RB9448
Best DB hits: BLAST: pir:C82978; conserved hypothetical protein PA5333 [imported] -; E=1e-12 pir:S74932; hypothetical protein slr0686 - Synechocystis sp. (strain; E=1e-08 COG: PA5333; COG3296 Uncharacterized BCR; E=1e-13.
  
    0.481
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.