STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5071Hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.0048. (302 aa)    
Predicted Functional Partners:
RB2860
PMID: 10567266 best DB hits: BLAST: pir:C75477; probable fimbrial assembly protein PilM - Deinococcus; E=1e-19 gb:AAK00347.1; AF329876_3 (AF329876) putative membrane protein; E=1e-06 pir:S75816; membrane protein pilM - Synechocystis sp. (strain PCC; E=8e-06 COG: DR0770; COG0849 Predicted ATPases of the HSP70 class involved in; E=1e-20.
  
     0.634
RB5067
Hypothetical protein.
       0.615
RB5068
Hypothetical protein.
       0.615
RB5069
Hypothetical protein.
       0.615
RB6977
UDP-N-acetylhexosamine pyrophosphorylase; PMID: 9603950 best DB hits: BLAST: gb:AAB31210.2; (S73498) AgX-1 antigen [Homo sapiens]; E=9e-64 swissprot:Q16222; UAP1_HUMAN UDP-N-ACETYLHEXOSAMINE; E=9e-64 gb:AAF52387.1; (AE003613) BcDNA:LD24639 gene product [Drosophila; E=1e-63 PFAM: PF01128; Uncharacterized protein family UPF00; E=0.091 PF01704; UTP--glucose-1-phosphate uridylyltra; E=3.5e-37.
  
     0.610
RB5073
Hypothetical protein.
       0.572
gspK
Probable general secretion pathway protein K; PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04.
  
   0.570
flgI-2
Best DB hits: BLAST: pir:G72242; flagellar P-ring protein - Thermotoga maritima (strain; E=9e-07 gb:AAG09321.1; (AF178757) CpcF [Nostoc sp. PCC 7120]; E=0.10 pir:T44927; hypothetical protein orf398 [imported] - Anabaena sp; E=0.47 COG: TM1539; COG1706 Flagellar basal-body P-ring protein; E=9e-08.
  
     0.527
RB8313
Putative glycosyl transferase (WbnE); PMID: 10531250 best DB hits: BLAST: gb:AAD50490.1; AF172324_8 (AF172324) WbnE [Escherichia coli]; E=7e-21 pir:C70036; capsular polysaccharide biosynthesis homolog yveN -; E=2e-19 pir:T35514; probable glycosyl transferase - Streptomyces coelicolor; E=2e-17 COG: BS_yveN; COG0438 Predicted glycosyltransferases; E=2e-20 PFAM: PF00534; Glycosyl transferases group 1; E=9.5e-43.
  
     0.518
RB12783
Hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.62.
  
     0.515
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.