STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5138Hypothetical protein. (58 aa)    
Predicted Functional Partners:
RB5137
Hypothetical protein.
       0.689
RB5139
Hypothetical protein-transmembrane prediction.
       0.572
RB5140
Probable NADH-dependent dehydrogenase; PMID: 8472911 best DB hits: BLAST: embl:CAB02496.1; (Z80356) glucose-fructose oxidoreductase; E=2e-07 pdb:1OFG; A Chain A, Glucose-Fructose Oxidoreductase -----; E=2e-07 pdb:1EVJ; A Chain A, Crystal Structure Of Glucose-Fructose; E=2e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-05 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-09.
       0.541
RB5143
Conserved hypothetical protein; PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=8e-10 pir:S77300; hypothetical protein slr1403 - Synechocystis sp. (strain; E=0.018 PFAM: PF02012; BNR repeat; E=0.076.
       0.412
RB5145
Hypothetical protein.
       0.412
RB5146
PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=6e-46 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=6e-46 swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=2e-45 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=4e-22 PFAM: PF01069; Fatty acid desaturase; E=0.82 PF00884; Sulfatase; E=1.4e-38.
       0.412
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.