STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5146PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=6e-46 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=6e-46 swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=2e-45 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=4e-22 PFAM: PF01069; Fatty acid desaturase; E=0.82 PF00884; Sulfatase; E=1.4e-38. (522 aa)    
Predicted Functional Partners:
RB5143
Conserved hypothetical protein; PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=8e-10 pir:S77300; hypothetical protein slr1403 - Synechocystis sp. (strain; E=0.018 PFAM: PF02012; BNR repeat; E=0.076.
       0.773
RB5145
Hypothetical protein.
       0.773
RB3353
Sialidase [Precursor]; PMID: 1400240 PMID: 8591030 best DB hits: BLAST: swissprot:Q02834; NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE); E=3e-40 pdb:1EUR; Sialidase ----- pdb: 1EUS Sialidase Complexed; E=3e-40 pdb:1EUU; Sialidase Or Neuraminidase, Large 68kd Form -----; E=3e-40 PFAM: PF02012; BNR repeat; E=0.1.
  
 
  0.733
nanH
Neuraminidase precursor; PMID: 8093075 best DB hits: BLAST: ddbj:BAA05853.1; (D28493) neuraminidase precursor [Bacteroides; E=4e-90 pir:JC2500; exo-alpha-sialidase (EC 3.2.1.18) precursor -; E=8e-89 swissprot:P31206; NANH_BACFR SIALIDASE (NEURAMINIDASE) -----; E=2e-68 PFAM: PF02012; BNR repeat; E=0.038.
  
 
  0.723
RB5140
Probable NADH-dependent dehydrogenase; PMID: 8472911 best DB hits: BLAST: embl:CAB02496.1; (Z80356) glucose-fructose oxidoreductase; E=2e-07 pdb:1OFG; A Chain A, Glucose-Fructose Oxidoreductase -----; E=2e-07 pdb:1EVJ; A Chain A, Crystal Structure Of Glucose-Fructose; E=2e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-05 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-09.
  
    0.576
RB5139
Hypothetical protein-transmembrane prediction.
       0.540
RB5138
Hypothetical protein.
       0.412
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.