STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5208Similar to biotin apo-protein ligase-related protein; PMID: 11030655 best DB hits: BLAST: embl:CAA98714.1; (Z74189) ORF YDL141w [Saccharomyces cerevisiae]; E=0.018 pir:H81716; biotin apo-protein ligase-related protein TC0305; E=0.020 pir:A72116; biotin apo-protein ligase-related protein CP0643; E=0.089. (274 aa)    
Predicted Functional Partners:
RB9513
Probable mu-protocadherin-putative cell-suface protein; PMID: 1501644 best DB hits: BLAST: gb:AAF70456.1; AF221952_1 (AF221952) mu-protocadherin [Rattus; E=5e-08 gb:AAF45927.1; (AE003430) CG15570 gene product [Drosophila; E=3e-07 embl:CAC16087.1; (AJ289697) zona pellucida protein 1 [Gallus; E=5e-07 COG: VC1711; COG1032 Fe-S oxidoreductases family 2; E=6e-04.
  
     0.708
RB3804
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.692
RB11027
Probable ABC transport system integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1; (AL442120) putative ABC transport system; E=1e-06 pir:G70821; hypothetical protein Rv0987 - Mycobacterium tuberculosis; E=0.005 ddbj:BAB06840.1; (AP001517) BH3121~unknown conserved protein; E=0.011 COG: Rv0987_1; COG0577 Predicted permease; E=8e-04 PFAM: PF02687; Predicted permease; E=3.3e-13.
  
     0.669
RB11055
Conserved hypothetical protein; PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=7e-09 pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.010 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.001 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.022 PF02012; BNR repeat; E=0.32.
  
     0.646
RB12303
Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.
  
     0.642
RB1828
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.625
RB3579
Best DB hits: BLAST: pir:S75452; hypothetical protein slr1506 - Synechocystis sp. (strain; E=2e-09 pir:S76481; hypothetical protein - Synechocystis sp. (strain PCC; E=5e-09 ddbj:BAB04446.1; (AP001509) BH0727~unknown conserved protein in; E=5e-08.
  
     0.601
RB11249
Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.
  
     0.595
RB5207
Hypothetical protein.
       0.592
RB5209
Hypothetical protein.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.