STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5245Hemolysin III; PMID: 7495855 best DB hits: BLAST: ddbj:BAB06584.1; (AP001516) hemolysin III [Bacillus halodurans]; E=1e-17 swissprot:P54176; HLY3_BACCE HEMOLYSIN III (HLY-III) -----; E=2e-16 swissprot:Q46827; YQFA_ECOLI HYPOTHETICAL 23.8 KD PROTEIN IN; E=2e-16 COG: BH2865; COG1272 Predicted membrane proteins, hemolysin III homologs; E=1e-18. (219 aa)    
Predicted Functional Partners:
xynB-2
Probable endo-1,4-beta-xylanase B; PMID: 1909424 best DB hits: BLAST: swissprot:P26223; XYNB_BUTFI ENDO-1,4-BETA-XYLANASE B (XYLANASE B); E=1e-08 prf:1718306A; xylanase [Butyrivibrio fibrisolvens]; E=1e-08 gb:AAK04528.1; AE006280_4 (AE006280) sugar hydrolase [Lactococcus; E=4e-06.
  
   0.779
RB5241
Hypothetical protein; Best DB hits: PFAM: PF01434; Peptidase family M41; E=0.034.
       0.773
RB9228
Hypothetical protein.
    
 0.758
RB5240
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF01617; Surface antigen; E=0.0013.
       0.548
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
   
 
 0.494
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
   
 
 0.449
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.444
RB5238
Hypothetical protein-transmembrane prediction.
       0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.