STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5256Cellulase; PMID: 1955860 best DB hits: BLAST: pir:B72216; endoglucanase - Thermotoga maritima (strain MSB8); E=7e-85 swissprot:P25472; GUND_CLOCE ENDOGLUCANASE D PRECURSOR; E=3e-52 swissprot:P16218; GUNH_CLOTM ENDOGLUCANASE H PRECURSOR (EGH); E=5e-49 COG: TM1751; COG2730 Endoglucanase; E=6e-86 PFAM: PF00150; Cellulase (glycosyl hydrolase famil; E=5.3e-47. (528 aa)    
Predicted Functional Partners:
RB4606
PMID: 9371463 best DB hits: BLAST: pir:D69100; probable protein disulfide-isomerase (EC 5.3.4.1); E=5e-08 gb:AAG20098.1; (AE005089) Vng1905c [Halobacterium sp. NRC-1]; E=1e-04 pir:B70456; thioredoxin - Aquifex aeolicus ----- gb:; E=6e-04 COG: MTH1745; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-09 VNG1905C; COG1331 Highly conserved protein containing a thioredoxin; E=1e-05 aq_1811; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-05.
   
 
 0.819
trx-2
Best DB hits: BLAST: pir:D69100; probable protein disulfide-isomerase (EC 5.3.4.1); E=7e-07 gb:AAG20098.1; (AE005089) Vng1905c [Halobacterium sp. NRC-1]; E=9e-05 gb:AAB89512.1; (AE000983) conserved hypothetical protein; E=1e-04 COG: MTH1745; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-08 VNG1905C; COG1331 Highly conserved protein containing a thioredoxin; E=9e-06 VCA0647; COG3350 Uncharacterized ACR; E=0.009.
   
 
 0.819
RB9911
Endo-1,4-beta-xylanase; PMID: 3139632 PMID: 7664125 best DB hits: BLAST: gb:AAA90913.1; (U33060) endo-1,4-beta-xylanase [Thermotoga sp.]; E=2e-33 pir:B72423; endo-1,4-beta-xylanase B - Thermotoga maritima (strain; E=3e-33 swissprot:Q60041; XYNB_THENE ENDO-1,4-BETA-XYLANASE B PRECURSOR; E=2e-31 PFAM: PF00331; Glycosyl hydrolase family 10; E=0.05.
  
   
 0.698
RB5316
Pectate lyase; PMID: 8955401 PMID: 1983191 best DB hits: BLAST: pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp -----gb:; E=6e-30 pir:D72376; pectate lyase - Thermotoga maritima (strain MSB8); E=1e-26 ddbj:BAA96477.1; (AB041769) pectate lyase Pel-4A [Bacillus sp; E=3e-25 PFAM: PF00544; Pectate lyase; E=8.6e-31.
  
  
 0.600
RB5247
Putative WD-repeat containing protein; Best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=2e-25 swissprot:P49695; PKWA_THECU PUTATIVE SERINETHREONINE-PROTEIN; E=1e-21 embl:CAB45034.1; (AL078635) putative WD-repeat containing protein; E=1e-21 COG: sll0163; COG2319 WD40 repeat protein; E=4e-18 PFAM: PF00400; WD domain, G-beta repeat; E=3e-05.
       0.556
RB5253
Similar to S-layer related protein; PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=0.18 PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.1 PF02368; Bacterial Ig-like domain (group 2); E=0.013.
       0.556
RB5255
Hypothetical protein.
       0.556
xlnC
Probable endo-1,4-beta-xylanase homolog T27I17; PMID: 8917072 best DB hits: BLAST: pir:T05214; hypothetical protein F17I5.50 - Arabidopsis thaliana; E=1e-14 pir:T00624; endo-1,4-beta-xylanase homolog T27I1.7 - Arabidopsis; E=6e-14 ddbj:BAA88262.1; (AB008015) similar to xylan endohydrolase; E=1e-12.
  
   
 0.531
RB12316
Similar to chitooligosaccharide deacetylase; Best DB hits: BLAST: pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.24 gb:AAK00156.1; AF222753_11 (AF222753) nodulation; E=0.50 pir:T50960; related to nodulation protein nodB [imported] -; E=0.69 PFAM: PF01522; Polysaccharide deacetylase; E=0.0074.
  
   
 0.515
xynB
Similar to xylanase; PMID: 9294005 best DB hits: BLAST: embl:CAA72323.1; (Y11564) xylanase [Rhodothermus marinus]; E=2e-06 embl:CAA60868.1; (X87417) xylanase [Rhodothermus marinus]; E=2e-06 pir:B72423; endo-1,4-beta-xylanase B - Thermotoga maritima (strain; E=4e-06 COG: sll0656_1; COG3204 Uncharacterized BCR; E=6e-06 XF0845; COG1472 Beta-glucosidase-related glycosidases; E=0.008 PFAM: PF00404; Dockerin type I repeat; E=0.49 PF02369; Bacterial Ig-like domain (group 1); E=0.16.
  
   
 0.511
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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