STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5263Best DB hits: BLAST: ref:XP_010773.1; hypothetical protein FLJ11151 [Homo sapiens]; E=2e-53 ddbj:BAA92034.1; (AK002013) unnamed protein product [Homo; E=7e-53 ddbj:BAB14194.1; (AK022710) unnamed protein product [Homo; E=2e-52. (315 aa)    
Predicted Functional Partners:
ogt
Conserved hypothetical protein containing TPR-repeats; PMID: 9083067 best DB hits: BLAST: swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=9e-05 gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=9e-05 gb:AAA62535.1; (U21320) contains TPR domain-like repeats; E=0.003 PFAM: PF00515; TPR Domain; E=0.00017.
  
     0.742
RB5262
Hypothetical protein-transmembrane prediction.
       0.701
RB12633
PMID: 10751411 best DB hits: BLAST: gb:AAD48846.1; AF168362_1 (AF168362) protein associating with; E=3e-05 gb:AAF56739.2; (AE003762) CG12879 gene product [Drosophila; E=4e-05 pir:T15138; hypothetical protein T28F2.4 - Caenorhabditis elegans; E=5e-04 COG: NMB1786; COG2850 Uncharacterized ACR; E=0.007 PFAM: PF02373; jmjC domain; E=0.018.
  
     0.687
RB11529
Probable beta-1,4 N-acetylgalactosaminyltransferase; PMID: 1601877 best DB hits: BLAST: gb:AAA35516.1; (M83651) beta-1,4; E=6e-07 ddbj:BAA04632.1; (D17809) beta-4N-acetylgalactosaminyltransferase; E=2e-06 gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 COG: BS_yveT; COG0463 Glycosyltransferases involved in cell wall; E=0.003 PFAM: PF00535; Glycosyl transferase; E=5.2e-08.
  
     0.653
RB11133
Matrix metalloproteinase 1; PMID: 10964925 PMID: 7657606 best DB hits: BLAST: gb:AAF47255.1; (AE003464) CG4859 gene product [Drosophila; E=3e-18 gb:AAG33131.1; AF271666_1 (AF271666) matrix metalloproteinase 1; E=3e-18 embl:CAA78248.1; (Z12604) stromelysin-3 [Mus musculus]; E=8e-16 PFAM: PF00404; Dockerin type I repeat; E=0.0079.
  
     0.575
RB3946
Best DB hits: BLAST: pir:G83466; hypothetical protein PA1424 [imported] - Pseudomonas; E=1e-20 pir:C82132; conserved hypothetical protein VC1980 [imported] -; E=3e-18 gb:AAF54040.1; (AE003672) CG10050 gene product [Drosophila; E=3e-12 COG: PA1424; COG3148 Uncharacterized ACR; E=1e-21.
  
     0.572
RB2794
Deoxyribonuclease gamma [precursor]; PMID: 9665719 best DB hits: BLAST: gb:AAC64266.1; (AF059612) deoxyribonuclease gamma [Xenopus; E=1e-19 gb:AAB00496.1; (L40823) DNL1L gene product [Homo sapiens]; E=5e-17 gb:AAB17022.1; (U06846) XIB [Homo sapiens]; E=7e-17 PFAM: PF01181; Deoxyribonuclease I (DNase I); E=1.3e-10.
  
     0.549
RB5645
Serine protease; PMID: 2180903 best DB hits: BLAST: embl:CAA73938.1; (Y13616) degP [Bradyrhizobium japonicum]; E=2e-23 gb:AAF87931.1; AF163841_10 (AF163841) putative serine protease; E=4e-22 swissprot:P54925; DEGP_BARHE PROBABLE PERIPLASMIC SERINE PROTEASE; E=7e-21 COG: slr1204; COG0265 Trypsin-like serine proteases, typically; E=1e-19 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=1e-18 BB0104; COG0265 Trypsin-like serine proteases, typically; E=2e-18 PFAM: PF00089; Trypsin; E=4.9e-10 PF00595; PDZ domain (Also known as DHR or GLG; E=0.0022.
  
 
   0.531
RB5259
Helicase, Snf2 family; Best DB hits: BLAST: pir:D83545; probable helicase PA0799 [imported] - Pseudomonas; E=8e-44 pir:C72027; swisnf family helicase_2 - Chlamydophila pneumoniae; E=6e-42 ddbj:BAA99057.1; (AP002548) SWISNF family helicase_2; E=1e-41 COG: PA0799; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=7e-45 PFAM: PF00176; SNF2 and others N-terminal domain; E=2.4e-43 PF00271; Helicase conserved C-terminal doma; E=1.4e-23.
   
   0.526
RB10127
PMID: 8700860 PMID: 3399393 best DB hits: BLAST: gb:AAC59865.1; (U37373) up-regulated by thyroid hormone in; E=9e-60 ddbj:BAB14717.1; (AK023902) unnamed protein product [Homo; E=6e-59 pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=5e-42 COG: slr1608; COG2133 Glucose/sorbosone dehydrogenases; E=1e-22.
  
     0.524
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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