STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5313Conserved hypothetical protein-putative ATP binding protein; PMID: 10360571 best DB hits: BLAST: pir:F72395; hypothetical protein TM0280 - Thermotoga maritima; E=1e-102 gb:AAG58726.1; AE005584_8 (AE005584) orf; hypothetical protein; E=2e-82 ddbj:BAB05596.1; (AP001513) BH1877~unknown conserved protein in; E=6e-15. (688 aa)    
Predicted Functional Partners:
RB5316
Pectate lyase; PMID: 8955401 PMID: 1983191 best DB hits: BLAST: pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp -----gb:; E=6e-30 pir:D72376; pectate lyase - Thermotoga maritima (strain MSB8); E=1e-26 ddbj:BAA96477.1; (AB041769) pectate lyase Pel-4A [Bacillus sp; E=3e-25 PFAM: PF00544; Pectate lyase; E=8.6e-31.
 
     0.810
pel
Pectate lyase; PMID: 8955401 PMID: 9427544 best DB hits: BLAST: embl:CAA65785.1; (X97119) pectate lyase [Erwinia chrysanthemi]; E=5e-29 pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp ----- gb:; E=0.026 gb:AAF23285.1; AC016661_10 (AC016661) putative pectate lyase; E=0.037.
 
     0.793
fucA
alpha-L-fucosidase; PMID: 2803312 PMID: 2894306 best DB hits: BLAST: pir:B82515; alpha-L-fucosidase XF2714 [imported] - Xylella; E=4e-71 embl:CAC24067.1; (AL512981) Hypothetical [Sulfolobus; E=3e-67 pir:S10235; alpha-L-fucosidase (EC 3.2.1.51) precursor - rat; E=8e-51 PFAM: PF01120; Alpha-L-fucosidase; E=4.4e-27.
  
     0.745
ramA
alfa-L-rhamnosidase; PMID: 10632887 best DB hits: BLAST: embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=1e-103 pir:T36406; hypothetical protein SCF34.07 - Streptomyces coelicolor; E=4e-89 embl:CAB55731.1; (AL117387) putative secreted protein [Streptomyces; E=1e-69 PFAM: PF02083; Urotensin II; E=0.87.
  
     0.743
RB13259
Best DB hits: BLAST: pir:A72314; hypothetical protein TM0950 - Thermotoga maritima; E=3e-16.
  
     0.620
RB5406
Carbohydrate kinase, FGGY family; PMID: 1659648 best DB hits: BLAST: gb:AAF01486.1; AF137263_5 (AF137263) L-fuculose kinase; E=1e-84 ddbj:BAB05270.1; (AP001512) rhamnulokinase [Bacillus halodurans]; E=3e-79 pir:E70014; rhamnulokinase (EC 2.7.1.5) yulC - Bacillus subtilis; E=8e-75 COG: BH1551; COG1070 Sugar (pentulose and hexulose) kinases; E=2e-80 VNG1967G; COG0554 Glycerol kinase; E=2e-04 BH2676; COG1070 Sugar (pentulose and hexulose) kinases; E=0.004 PFAM: PF00370; FGGY family of carbohydrate kin; E=7.3e-12 PF02782; FGGY family of carbohydrate kin; E=0.11.
  
     0.606
RB5310
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11259647 best DB hits: BLAST: gb:AAA93130.1; (U09139) chitinase protein precursor [Aeromonas; E=0.63 gb:AAG09437.1; AF181852_1 (AF181852) chitinase 92 [Aeromonas; E=0.63 PFAM: PF00801; PKD domain; E=0.25 PF00028; Cadherin domain; E=0.047.
 
     0.588
RB3773
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S75596; hypothetical protein slr1342 - Synechocystis sp. (strain; E=2e-54 gb:AAF25989.1; AC013354_8 (AC013354) F15H18.21 [Arabidopsis; E=4e-54 gb:AAF78379.1; AC069551_12 (AC069551) T10O22.24 [Arabidopsis; E=1e-52 COG: slr1342; COG3395 Uncharacterized protein; E=2e-55.
      0.580
abf2
alpha-L-arabinofuranosidase II; PMID: 20125575 best DB hits: BLAST: ddbj:BAB05586.1; (AP001513) BH1867~unknown conserved protein; E=1e-23 pir:B59296; alpha-L-arabinofuranosidase II [validated] -; E=6e-19 embl:CAB89837.1; (AJ242516) hypothetical protein [Salmonella; E=1e-18; Belongs to the glycosyl hydrolase 43 family.
 
     0.576
RB9146
Best DB hits: BLAST: pir:A72314; hypothetical protein TM0950 - Thermotoga maritima; E=0.001.
  
     0.571
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.