STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5365Probable NADH-dependent dehydrogenase; Best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=4e-10 gb:AAC31181.1; (AF076240) unknown [Rhizobium leguminosarum bv; E=2e-09 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-09 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=5e-10 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=3.1e-15. (465 aa)    
Predicted Functional Partners:
RB5776
NADH-dependent dehydrogenase; PMID: 10086842 best DB hits: BLAST: pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=3e-27 ddbj:BAB07562.1; (AP001520) oxidoreductase [Bacillus halodurans]; E=5e-26 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-23 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=3e-28 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=7.5e-40 PF02894; Oxidoreductase family, C-termi; E=2.8e-10.
  
     0.727
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
  
     0.726
RB1939
Probable oxidoreductase; PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=6e-06 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=1e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=2e-08 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=5e-14.
  
     0.720
RB5644
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=6e-04 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-04 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.055.
  
     0.718
RB1063
Oxidoreductase; PMID: 10086842 best DB hits: BLAST: pir:T04014; hypothetical protein F17A8.20 - Arabidopsis thaliana; E=4e-24 ddbj:BAB07562.1; (AP001520) oxidoreductase [Bacillus halodurans]; E=8e-21 gb:AAD39613.1; AC007454_12 (AC007454) Similar to gb D14605 AX110P; E=2e-20 COG: BH3843; COG0673 Predicted dehydrogenases and related proteins; E=8e-22 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=4.8e-38.
  
     0.691
strI
PMID: 1654502 best DB hits: BLAST: swissprot:P09400; STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=5e-06 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=0.014 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=4e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.4e-05.
  
     0.688
RB273
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-08 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-07 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.002.
  
     0.669
RB7152
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-09 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=3e-07 PFAM: PF01302; CAP-Gly domain; E=0.33.
  
     0.649
RB5140
Probable NADH-dependent dehydrogenase; PMID: 8472911 best DB hits: BLAST: embl:CAB02496.1; (Z80356) glucose-fructose oxidoreductase; E=2e-07 pdb:1OFG; A Chain A, Glucose-Fructose Oxidoreductase -----; E=2e-07 pdb:1EVJ; A Chain A, Crystal Structure Of Glucose-Fructose; E=2e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-05 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-09.
  
     0.645
RB3770
Probable NADH-dependent dyhydrogenase; PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-19 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=2e-17 pir:G72391; conserved hypothetical protein - Thermotoga maritima; E=9e-15 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=3e-20 PFAM: PF01408; Oxidoreductase family, NAD-bi; E=1.5e-26.
  
     0.640
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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