STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5377Hypothetical protein-signal peptide and transmembrane prediction. (159 aa)    
Predicted Functional Partners:
RB5374
Hypothetical protein; Best DB hits: PFAM: PF00515; TPR Domain; E=0.61.
       0.618
RB5373
Hypothetical protein.
       0.535
RB5378
Aryl-sulphate sulphohydrolase; PMID: 10336424 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-36 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-34 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-33 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=1e-29 PFAM: PF02418; Integral membrane protein of unk; E=0.83 PF00884; Sulfatase; E=6.6e-32.
       0.509
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.