STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5385Hypothetical protein. (36 aa)    
Predicted Functional Partners:
RB5387
Hypothetical protein-transmembrane prediction.
       0.757
RB5389
Hypothetical protein-transmembrane prediction.
       0.504
RB5390
Hypothetical protein-transmembrane prediction.
       0.504
RB5380
PMID: 8063104 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=9e-06 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.007 swissprot:P54742; AFSK_STRGR SERINETHREONINE PROTEIN KINASE AFSK; E=0.007 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=8e-07 PFAM: PF01011; PQQ enzyme repeat; E=0.0098.
       0.459
RB5383
Probable sulfatase atsG; PMID: 10950929 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=8e-23 gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=1e-20 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=2e-20 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=8e-24 PFAM: PF00884; Sulfatase; E=5.2e-13.
       0.459
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.