STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5403Hypothetical protein. (50 aa)    
Predicted Functional Partners:
RB5401
Hypothetical protein.
       0.773
RB5404
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: embl:CAB76850.1; (AL049698) dJ470B24.1.3 (myeloidlymphoid or; E=0.73 embl:CAB76849.1; (AL049698) dJ470B24.1.5 (myeloidlymphoid or; E=0.78.
       0.718
mthfs
5-formyltetrahydrofolate cyclo-ligase; PMID: 8034591 PMID: 8522195 best DB hits: BLAST: ddbj:BAB05136.1; (AP001512) 5-formyltetrahydrofolate cyclo-ligase; E=7e-17 pir:C70449; conserved hypothetical protein aq_1731 - Aquifex; E=3e-16 swissprot:P54491; YQGN_BACSU HYPOTHETICAL 21.4 KD PROTEIN IN; E=8e-14 COG: BH1417; COG0212 5-formyltetrahydrofolate cyclo-ligase; E=7e-18 PFAM: PF01812; 5-formyltetrahydrofolate cyclo; E=1.4e-38.
       0.493
RB5406
Carbohydrate kinase, FGGY family; PMID: 1659648 best DB hits: BLAST: gb:AAF01486.1; AF137263_5 (AF137263) L-fuculose kinase; E=1e-84 ddbj:BAB05270.1; (AP001512) rhamnulokinase [Bacillus halodurans]; E=3e-79 pir:E70014; rhamnulokinase (EC 2.7.1.5) yulC - Bacillus subtilis; E=8e-75 COG: BH1551; COG1070 Sugar (pentulose and hexulose) kinases; E=2e-80 VNG1967G; COG0554 Glycerol kinase; E=2e-04 BH2676; COG1070 Sugar (pentulose and hexulose) kinases; E=0.004 PFAM: PF00370; FGGY family of carbohydrate kin; E=7.3e-12 PF02782; FGGY family of carbohydrate kin; E=0.11.
       0.475
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.