STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5499Conserved hypothetical protein-putative secreted protein; Best DB hits: BLAST: ddbj:BAB07052.1; (AP001518) BH3333~unknown conserved protein in; E=8e-21 embl:CAC10313.1; (AL442629) hypothetical protein SCH63.22c; E=0.76. (447 aa)    
Predicted Functional Partners:
RB5500
Conserved hypothetical protein; PMID: 9665876 best DB hits: BLAST: swissprot:O83487; Y474_TREPA HYPOTHETICAL PROTEIN TP0474 -----; E=5e-54 swissprot:Q51423; Y964_PSEAE HYPOTHETICAL PROTEIN PA0964 -----; E=2e-53 swissprot:O67517; YF75_AQUAE HYPOTHETICAL PROTEIN AQ_1575 -----; E=5e-53 COG: TP0474; COG0217 Uncharacterized ACR; E=4e-55 PFAM: PF01709; Domain of unknown function DUF28; E=8e-105.
       0.718
RB5501
Hypothetical protein.
       0.515
rbfA
Probable ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.502
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.