STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspKProbable general secretion pathway protein K; PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04. (634 aa)    
Predicted Functional Partners:
RB5514
Hypothetical protein.
  
 
 0.987
gspG-2
PMID: 1640836 PMID: 8407845 best DB hits: BLAST: pir:B70338; general secretion pathway protein G - Aquifex aeolicus; E=0.065 swissprot:P31733; GSPG_AERHY GENERAL SECRETION PATHWAY PROTEIN G; E=0.29 pir:B82670; general secretory pathway protein G precursor XF1519; E=0.83 COG: aq_418; COG2165 General secretory pathway proteins G and H and; E=0.006.
 
   0.901
RB10569
Hypothetical protein-putative conserved hypothetical protein.
  
   0.808
RB5516
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF02501; Bacterial type II secretion system p; E=0.08.
       0.806
RB5515
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12024217.
       0.794
RB5511
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA77335.1; (AB019494) IDN3 [Homo sapiens]; E=0.21 ddbj:BAA77349.1; (AB019602) IDN3-B [Homo sapiens]; E=0.21.
     
 0.781
comQ
Similar to general secretory pathway protein D; PMID: 10419967 best DB hits: BLAST: gb:AAK00351.1; AF329876_7 (AF329876) putative outer membrane protein; E=2e-10 embl:CAA32520.1; (X14336) gene IV product [Bacteriophage I2-2]; E=2e-08 pir:D82816; fimbrial assembly protein XF0373 [imported] - Xylella; E=4e-05 COG: XF0373; COG1450 General secretory pathway protein D; E=3e-06 PFAM: PF00263; Bacterial type II and III secretion; E=5.3e-20; Belongs to the bacterial secretin family.
 
   
 0.780
RB5509
Hypothetical protein.
       0.777
RB13170
Hypothetical protein-putative conserved hypothetical protein.
  
   0.773
RB5522
Hypothetical protein.
       0.773
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.