STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5540Conserved hypothetical protein; PMID: 8760912 best DB hits: BLAST: swissprot:P42981; YPJG_BACSU HYPOTHETICAL 24.8 KD PROTEIN IN; E=9e-17 ddbj:BAB05401.1; (AP001512) BH1682~unknown conserved protein; E=2e-15 gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=6e-15 COG: BS_ypjG; COG2120 Uncharacterized proteins, LmbE homologs; E=9e-18 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=2.5e-20. (255 aa)    
Predicted Functional Partners:
RB3342
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=8e-12 embl:CAA77139.1; (Y18353) hypothetical protein [Thermus; E=4e-09 pir:C75001; hypothetical protein PAB1341 - Pyrococcus abyssi (strain; E=4e-09 COG: PAB1341; COG2120 Uncharacterized proteins, LmbE homologs; E=4e-10 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=8.8e-12.
  
     0.773
RB12891
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=1e-06 pir:C75001; hypothetical protein PAB1341 - Pyrococcus abyssi (strain; E=3e-06 embl:CAB66204.1; (AL136502) hypothetical protein SCF43.15c; E=5e-05 COG: PAB1341; COG2120 Uncharacterized proteins, LmbE homologs; E=3e-07 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=1.1e-05.
  
     0.726
RB5524
Conserved hypothetical protein; PMID: 11759840 best DB hits: BLAST: embl:CAC19834.1; (AJ401093) hypothetical protein [Actinomyces; E=0.17.
       0.572
chlI
PMID: 8663186 best DB hits: BLAST: pir:G75255; probable magnesium protoporphyrin chelatase -; E=3e-84 pir:D70717; hypothetical protein Rv0958 - Mycobacterium tuberculosis; E=4e-69 gb:AAF82071.1; AF232750_3 (AF232750) Rv0958-like protein; E=2e-25 COG: DR2594; COG1239 Mg-chelatase subunit ChlI; E=2e-85 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=1.1e-12.
  
     0.541
RB12422
Hypothetical protein; PMID: 12004073.
  
   
 0.470
RB5523
Hypothetical protein.
       0.434
gspK
Probable general secretion pathway protein K; PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04.
       0.426
RB5514
Hypothetical protein.
       0.426
RB5515
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12024217.
       0.426
RB5516
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF02501; Bacterial type II secretion system p; E=0.08.
       0.426
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.