STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5614Hypothetical protein-transmembrane prediction. (151 aa)    
Predicted Functional Partners:
RB5613
Best DB hits: BLAST: pir:B75319; conserved hypothetical protein - Deinococcus radiodurans; E=5e-47 gb:AAG55401.1; AE005281_4 (AE005281) orf, hypothetical protein; E=8e-17 swissprot:P75843; YCAQ_ECOLI HYPOTHETICAL 47.7 KDA PROTEIN IN; E=3e-16 COG: DR2072; COG3214 Uncharacterized BCR; E=5e-48.
       0.671
RB5611
Hypothetical protein.
       0.604
RB5612
Hypothetical protein-signal peptide and transmembrane prediction.
       0.604
RB5608
Best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional; E=4e-32 embl:CAB58265.1; (AL121849) putative multi-domain protein; E=6e-30 pir:T36423; probable large, multifunctional secreted protein -; E=9e-05.
       0.471
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.