STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5641Best DB hits: BLAST: pir:H81355; probable integral membrane protein Cj0832c [imported] -; E=2e-58 pir:D75220; hypothetical protein PAB2161 - Pyrococcus abyssi (strain; E=3e-54 pir:D71202; hypothetical protein PH1889 - Pyrococcus horikoshii; E=4e-52 COG: Cj0832c; COG1757 Na+/H+ antiporter; E=2e-59. (542 aa)    
Predicted Functional Partners:
RB5637
Conserved hypothetical protein-putative sugar phosphate isomerases/epimerases; Best DB hits: BLAST: pir:A83457; conserved hypothetical protein PA1501 [imported] -; E=1e-11 gb:AAG59852.1; AF284750_1 (AF284750) HT036-ISO [Homo sapiens]; E=9e-10 swissprot:P36951; TRLC_DROME TRANSIENT RECEPTOR POTENTIAL LOCUS C; E=2e-09 COG: PA1501; COG1082 Predicted endonucleases; E=1e-12; Belongs to the hyi family.
       0.642
RB5638
Conserved hypothetical protein; PMID: 11337471 best DB hits: BLAST: gb:AAK05748.1; AE006395_8 (AE006395) UNKNOWN PROTEIN [Lactococcus; E=0.018 pir:G81786; Neisseria-specific antigen protein, TspA NMA2146; E=0.38 gb:AAF57761.1; (AE003801) CG5765 gene product [Drosophila; E=0.51 PFAM: PF00249; Myb-like DNA-binding domain; E=0.16.
       0.642
RB3967
Probable sodium/proline symporter (proline permease); PMID: 8031825 best DB hits: BLAST: gb:AAG20007.1; (AE005081) pantothenate permease; PanF; E=2e-20 pir:C69115; sodiumproline symporter (proline permease) -; E=3e-11 pir:B69833; metabolite permease homolog yhjB - Bacillus subtilis; E=7e-11 COG: VNG1785G; COG0591 Na+/proline, Na+/panthothenate symporters and; E=2e-21 panF; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=3e-04 NMB0402; COG0591 Na+/proline, Na+/panthothenate symporters and; E=7e-04 PFAM: PF00474; Sodium:solute symporter family; E=0.11; Belongs to the sod [...]
  
  
 0.576
RB5043
Conserved hypothetical protein-putative Na+/glutamate symporter; PMID: 8905231 best DB hits: BLAST: pir:S76683; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-25 COG: slr0625; COG0786 Na+/glutamate symporter; E=7e-26.
  
   
 0.540
RB7512
Putative integral membrane transport protein; PMID: 97000351 PMID: 8559252 best DB hits: BLAST: embl:CAC16517.1; (AL450223) putative integral membrane transport; E=3e-41 pir:A82432; sodiumsolute symporter VCA0667 [imported] - Vibrio; E=4e-26 pir:S75887; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-25 COG: VCA0667; COG0591 Na+/proline, Na+/panthothenate symporters and; E=4e-27 yidK; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=2e-06 PA0287; COG0591 Na+/proline, Na+/panthothenate symporters and; E=2e-06 PFAM: PF00474; Sodium:solute symporter family; E=1. [...]
  
  
 0.530
dagA
Putative Na(+)-linked D-alanine glycine permease; PMID: 1447975 best DB hits: BLAST: embl:CAC01597.1; (AL391041) putative amino acid transport; E=1e-90 gb:AAF12563.1; AE001826_32 (AE001826) Na(+)-linked D-alanine; E=5e-81 ddbj:BAB07752.1; (AP001520) amino acid transporter [Bacillus; E=4e-46 COG: DRB0133; COG1115 Na+/alanine symporter; E=4e-82 PFAM: PF02497; Arterivirus glycoprotein; E=0.45 PF00746; Gram positive anchor; E=0.031 PF01235; Sodium:alanine symporter fami; E=5.2e-96.
 
  
 0.494
putA
PMID: 96062224 best DB hits: BLAST: pir:H64526; proline dehydrogenase (EC 1.5.99.8); E=0.0 pir:B71980; proline dehydrogenase (EC 1.5.99.8); E=0.0 pir:C81297; proline dehydrogenase (EC 1.5.99.8); E=1e-180 COG: jhp0048_2; COG1012 NAD-dependent aldehyde dehydrogenases; E=1e-123 Cj1503c_1; COG0506 Proline dehydrogenase; E=2e-56 sll1561_2; COG1012 NAD-dependent aldehyde dehydrogenases; E=1e-51 PFAM: PF01619; Proline dehydrogenase; E=2e-36 PF00171; Aldehyde dehydrogenase family; E=0.0014; Belongs to the aldehyde dehydrogenase family.
  
    0.489
fliG-2
Flagellar motor switch protein fliG; PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=3e-60 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=2e-57 swissprot:P23448; FLIG_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=5e-57 COG: TM0220; COG1536 Flagellar motor switch protein; E=3e-61 PFAM: PF01706; FliG C-terminal domain; E=7.8e-45.
       0.485
RB5635
Hypothetical protein; Best DB hits: PFAM: PF01587; Monocarboxylate transporter; E=0.39.
       0.482
RB2788
Excitatory amino acid transporter; PMID: 8920929 best DB hits: BLAST: swissprot:Q10901; EAT1_CAEEL EXCITATORY AMINO ACID TRANSPORTER; E=3e-53 pir:T29633; hypothetical protein C12D12.2 - Caenorhabditis elegans; E=8e-53 gb:AAB41909.1; (U35250) CeGlt-2 [Caenorhabditis elegans]; E=1e-52 COG: aq_1330; COG1301 Na+/H+-dicarboxylate symporters; E=5e-49 PFAM: PF00375; Sodium:dicarboxylate symporter fami; E=5.2e-115; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.463
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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