STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5756Hypothetical protein-transmembrane prediction. (1329 aa)    
Predicted Functional Partners:
RB1651
Conserved hypothetical protein-putative Fe-S oxidoreductases; PMID: 8688087 best DB hits: BLAST: swissprot:Q57970; Y550_METJA HYPOTHETICAL PROTEIN MJ0550 -----; E=2e-04 gb:AAG20125.1; (AE005091) Vng1941c [Halobacterium sp. NRC-1]; E=0.006 gb:AAB90230.1; (AE001034) conserved hypothetical protein; E=0.15 COG: MJ0550; COG1244 Predicted Fe-S oxidoreductases; E=2e-05.
  
     0.775
RB11088
Similar to ASPIC; Best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.027 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.027 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=0.027.
  
     0.773
RB7240
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: gb:AAD51954.1; (AF170528) glycoprotein IIb; GPIIb [Oryctolagus; E=0.85.
  
     0.767
RB9073
Conserved hypothetical protein containing TPR domain; Best DB hits: PFAM: PF00515; TPR Domain; E=0.83.
  
     0.766
prnC
Putative halogenase; PMID: 8843436 best DB hits: BLAST: gb:AAB97506.1; (U74493) halogenase PrnC [Pseudomonas fluorescens]; E=3e-22 gb:AAD46367.1; AF161185_2 (AF161185) PrnC [Myxococcus fulvus]; E=1e-21 gb:AAD46372.1; AF161186_3 (AF161186) PrnC [Burkholderia; E=2e-21 PFAM: PF01494; FAD binding domain; E=0.009 PF01224; FAD-dependent glycerol-3-phos; E=0.048 PF00070; Pyridine nucleotide-disulphid; E=0.0082.
  
     0.765
RB11084
PMID: 9384377 best DB hits: BLAST: pir:F69688; response regulator aspartate phosphatase rapC - Bacillus; E=0.79.
  
     0.764
RB3382
Best DB hits: BLAST: pir:E69078; conserved hypothetical protein MTH1585 -; E=0.28.
  
     0.763
RB9066
Similar to RTX family exoprotein; Best DB hits: BLAST: gb:AAG54838.1; AE005229_1 (AE005229) putative RTX family exoprotein; E=0.005 swissprot:Q99144; PEX5_YARLI PEROXISOMAL TARGETING SIGNAL RECEPTOR; E=0.056 pir:A72220; conserved hypothetical protein - Thermotoga maritima; E=0.084 COG: TM1695; COG0457 TPR-repeat-containing proteins; E=0.008 PFAM: PF00515; TPR Domain; E=0.28 PF01839; FG-GAP repeat; E=0.0027.
  
     0.762
RB9156
Best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=2e-04 pir:H71261; conserved hypothetical protein TP0954 - syphilis; E=0.21 gb:AAF26789.1; AC016829_13 (AC016829) putative O-linked GlcNAc; E=0.44 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=2e-05 PFAM: PF00515; TPR Domain; E=0.14.
  
     0.761
RB10583
Conserved hypothetical protein-putative containing TPR-repeat; Best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=1e-05 ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.12 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.12 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=1e-06 PFAM: PF00515; TPR Domain; E=0.059.
  
     0.760
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.