STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB577Probable polymorphic membrane protein B/C family; PMID: 10684935 best DB hits: BLAST: pir:G71518; hypothetical protein pmpB - Chlamydia trachomatis; E=4e-07 pir:C81675; polymorphic membrane protein BC family TC0694; E=2e-06 gb:AAG57362.1; AE005455_3 (AE005455) putative ATP-binding; E=3e-05 PFAM: PF02415; Chlamydia protein of unknown functio; E=0.076. (703 aa)    
Predicted Functional Partners:
RB578
Hypothetical protein.
       0.773
RB576
Hypothetical protein.
       0.675
RB580
Hypothetical protein-transmembrane prediction.
       0.489
RB10165
Similar to polyhydroxyalkanoate depolymerase precursor; PMID: 7836292 best DB hits: BLAST: gb:AAA65703.1; (U12976) polyhydroxyalkanoate depolymerase; E=0.16 swissprot:P52090; PHA1_PSELE POLY(3-HYDROXYALKANOATE) DEPOLYMERASE; E=0.53 PFAM: PF01841; Transglutaminase-like superfam; E=0.00014.
  
     0.461
RB874
Hypothetical protein; PMID: 11481431.
  
     0.400
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.