STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5787Conserved hypothetical protein; PMID: 9180694 best DB hits: BLAST: pir:T14312; hypothetical protein - carrot transposon Tdc1 -----; E=0.54. (147 aa)    
Predicted Functional Partners:
RB5786
PMID: 9482716 best DB hits: BLAST: pir:B69196; conserved hypothetical protein MTH72 - Methanobacterium; E=7e-20 pir:F69210; conserved hypothetical protein MTH83 - Methanobacterium; E=3e-15 pir:S74665; outer membrane protein mom72, 72K - Synechocystis sp; E=2e-13 COG: MTH72; COG0457 TPR-repeat-containing proteins; E=7e-21 PFAM: PF00515; TPR Domain; E=0.12.
       0.773
RB5785
Hypothetical protein.
       0.628
RB5788
Conserved hypothetical protein-putative ferredoxin; PMID: 2185975 best DB hits: BLAST: gb:AAF53358.1; (AE003641) CG16885 gene product [Drosophila; E=0.40.
       0.556
RB5781
Hypothetical protein.
       0.546
trx
Probable thioredoxin; PMID: 9388228 best DB hits: BLAST: swissprot:P56430; THIO_HELPY THIOREDOXIN (TRX) ----- pir:; E=1e-06 swissprot:P80579; THIO_ALIAC THIOREDOXIN (TRX) ----- pdb: 1QUW; E=5e-06 pir:G75612; thioredoxin 1 - Deinococcus radiodurans (strain R1); E=1e-05 COG: jhp0763; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-07 PA4061; COG3118 Thioredoxin domain-containing protein; E=2e-06 Cj0147c; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-06 PFAM: PF00085; Thioredoxin; E=0.00016.
       0.546
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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