STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5793Hypothetical protein. (48 aa)    
Predicted Functional Partners:
RB5794
Hypothetical protein.
       0.463
ptsN
PMID: 7876255 best DB hits: BLAST: pir:A82153; PTS system, fructose-specific IIABC component VC1822; E=7e-05 ddbj:BAB03332.1; (AB035450) fructose specific permease; E=2e-04 pir:E82153; PTS system, fructose-specific IIABC component VC1826; E=0.001 COG: VC1822_1; COG1762 Phosphotransferase system; E=6e-06 CT290; COG1762 Phosphotransferase system mannitol/fructose-specific; E=1e-04 BH0828_1; COG1762 Phosphotransferase system; E=4e-04 PFAM: PF00359; Phosphoenolpyruvate-dependent sug; E=0.011.
       0.463
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.