STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5876Probable serine/threonine-protein kinase; PMID: 7768349 best DB hits: BLAST: swissprot:P54737; PKN5_MYXXA SERINETHREONINE-PROTEIN KINASE PKN5; E=3e-09 gb:AAF87930.1; AF163841_9 (AF163841) putative serinethreonine; E=4e-09 swissprot:P54738; PKN6_MYXXA SERINETHREONINE-PROTEIN KINASE PKN6; E=1e-07 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=1e-07 PFAM: PF00069; Protein kinase domain; E=3.8e-08 PF01130; CD36 family; E=0.61. (328 aa)    
Predicted Functional Partners:
RB140
Serine/threonine protein kinase; Best DB hits: BLAST: swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=2e-31 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=5e-31 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=9e-31 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-32 PFAM: PF00069; Protein kinase domain; E=6.9e-49 PF00515; TPR Domain; E=0.72.
  
     0.742
RB11955
Probable serine/threonine-protein kinase pknB; PMID: 11410353 PMID: 11856348 PMID: 8969512 PMID: 11234002 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=1e-44 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=9e-44 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=1e-42 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=1e-45 PFAM: PF00069; Protein kinase domain; E=9.2e-49.
  
     0.738
RB12902
Serine/threonine-protein kinase; PMID: 7774814 best DB hits: BLAST: pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=1e-18 pir:H75566; probable serinethreonine protein kinase - Deinococcus; E=3e-17 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=6e-17 COG: DR0058_1; COG0515 Serine/threonine protein kinases; E=3e-18 PFAM: PF00231; ATP synthase; E=0.83 PF00069; Protein kinase domain; E=5.8e-27.
  
     0.733
RB10333
Protein kinase homolog; Best DB hits: BLAST: pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=5e-18 pir:T42077; protein kinase homolog - Streptomyces coelicolor -----; E=1e-16 pir:T35491; probable serinethreonine-specific protein kinase pkaF -; E=1e-16 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-15 PFAM: PF00069; Protein kinase domain; E=3.2e-06.
  
     0.732
pknB-3
Probable serine/threonine-protein kinase pknB; Best DB hits: BLAST: swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=3e-40 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=9e-38 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=2e-37 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-41 PFAM: PF00069; Protein kinase domain; E=2e-47.
  
     0.728
RB11988
Probable serine/threonine-protein kinase pknB; PMID: 11410353 PMID: 11856348 PMID: 8969512 PMID: 11234002 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=2e-33 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=3e-33 swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=7e-29 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-34 PFAM: PF00069; Protein kinase domain; E=6.5e-41.
  
     0.727
pkn2-2
Putative serine/threonine-protein kinase; PMID: 7774814 best DB hits: BLAST: embl:CAB94054.1; (AL358672) putative serinethreonine-protein; E=9e-43 swissprot:P54736; PKN2_MYXXA SERINETHREONINE-PROTEIN KINASE PKN2; E=4e-39 swissprot:Q10697; PKNJ_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=2e-38 COG: Rv2088; COG0515 Serine/threonine protein kinases; E=2e-39 PFAM: PF00069; Protein kinase domain; E=1.6e-54.
  
    0.727
pkn
Putative serine/threonine-protein kinase; PMID: 7774814 best DB hits: BLAST: embl:CAB94054.1; (AL358672) putative serinethreonine-protein; E=3e-29 pir:T35491; probable serinethreonine-specific protein kinase pkaF -; E=1e-25 gb:AAF79944.1; AF233851_2 (AF233851) eukaryotic-type; E=1e-25 COG: Rv0015c; COG0515 Serine/threonine protein kinases; E=3e-26 PFAM: PF00069; Protein kinase domain; E=7.1e-37.
  
     0.726
RB8311
Probable protein kinase yloP; PMID: 7774814 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=2e-27 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=1e-26 pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=2e-26 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=1e-28 PFAM: PF00069; Protein kinase domain; E=3e-39.
  
     0.724
pknB-2
Probable serine/threonine-protein kinase pknB; PMID: 835671 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=3e-34 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=5e-33 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=9e-32 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=5e-34 PFAM: PF00069; Protein kinase domain; E=1.3e-46 PF00400; WD domain, G-beta repeat; E=0.00029.
  
     0.717
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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