STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5881Probable transcriptional regulator; Best DB hits: BLAST: embl:CAB75424.1; (AJ271623) ORF101~shows homology to one ORF; E=3e-04 embl:CAB53171.1; (AL109969) putative transcriptional regulator; E=9e-04 PFAM: PF01381; Helix-turn-helix; E=2.5e-05. (223 aa)    
Predicted Functional Partners:
RB5878
Hypothetical protein.
       0.773
RB5880
VOC domain-containing protein; Best DB hits: BLAST: embl:CAB55661.1; (AL117385) hypothetical protein [Streptomyces; E=0.38 PFAM: PF00903; Glyoxalase/Bleomycin resistance; E=0.00027.
       0.773
RB5882
Hypothetical protein.
       0.773
RB5884
Conserved hypothetical protein-putative transcriptional regulator; PMID: 9278503 best DB hits: BLAST: swissprot:P76068; YNAK_ECOLI HYPOTHETICAL 9.8 KD PROTEIN IN; E=5e-05 pir:T31008; hypothetical protein 422 - Sulfolobus sp. plasmid pNOB8; E=1e-04 pir:T31049; hypothetical protein 470 - Sulfolobus sp. plasmid pNOB8; E=0.001 COG: ynaK; COG1475 Predicted transcriptional regulators; E=5e-06 PFAM: PF02195; ParB-like nuclease domain; E=1.1e-10.
       0.773
RB5189
Hypothetical protein-transmembrane prediction.
  
     0.581
RB5886
Hypothetical protein.
       0.566
RB5887
Putative transposase; PMID: 10384242 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=1e-46 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=5e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=6e-45 COG: DRB0019.2; COG2801 Putative transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40.
       0.566
RB5888
Probable transposase A; PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) putative transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18.
       0.566
yahN
Best DB hits: BLAST: pir:H69818; conserved hypothetical protein yhaN - Bacillus subtilis; E=2e-07 ddbj:BAB05865.1; (AP001514) BH2146~unknown conserved protein; E=0.002 pir:S56387; hypothetical protein f1107 - Escherichia coli -----; E=0.004 COG: BH2146; COG1511 Predicted membrane protein; E=2e-04 yjeP; COG3264 Small-conductance mechanosensitive channel; E=4e-04 PFAM: PF00005; ABC transporter; E=0.1.
  
     0.434
RB5892
Hypothetical protein.
       0.430
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.