STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5996Hypothetical protein. (56 aa)    
Predicted Functional Partners:
rpiB-2
PMID: 8576032 best DB hits: BLAST: ddbj:BAB07486.1; (AP001519) ribose 5-phosphate epimerase (pentose; E=2e-28 swissprot:P37351; RPIB_ECOLI RIBOSE 5-PHOSPHATE ISOMERASE B; E=3e-27 pir:H70397; ribose 5-phosphate isomerase B - Aquifex aeolicus; E=3e-27 COG: BH3767; COG0698 Ribose 5-phosphate isomerase RpiB; E=2e-29 PFAM: PF02502; Ribose/Galactose Isomerase; E=5e-43.
       0.561
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.