STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6031Hypothetical protein. (492 aa)    
Predicted Functional Partners:
RB6030
Hypothetical protein.
       0.773
RB6033
Serine/threonine protein kinase; PMID: 7768349 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=2e-41 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=9e-39 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=8e-36 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=2e-42 PFAM: PF00069; Protein kinase domain; E=3.3e-46 PF00515; TPR Domain; E=0.1.
       0.773
RB6034
Probable RNA polymerase sigma-E factor; PMID: 7751307 best DB hits: BLAST: swissprot:P44790; RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR; E=1e-11 gb:AAK03873.1; (AE006215) RpoE [Pasteurella multocida]; E=3e-11 pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=4e-10 COG: HI0628; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-12 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.0021.
       0.773
RB6037
Hypothetical protein.
       0.773
RB6038
Hypothetical protein.
       0.773
RB6025
Hypothetical protein; Best DB hits: PFAM: PF00404; Dockerin type I repeat; E=0.21 PF00160; Cyclophilin type peptidyl-proly; E=0.12.
       0.603
RB6040
Best DB hits: BLAST: pir:G82309; probable hemolysin VC0558 [imported] - Vibrio cholerae; E=4e-10 gb:AAG20419.1; (AE005114) hemolysin protein; Hlp [Halobacterium; E=6e-09 ddbj:BAA16497.1; (D90888) similar to [SwissProt Accession Number; E=9e-09 COG: VC0558; COG1253 Uncharacterized CBS domain-containing proteins; E=4e-11 PFAM: PF01595; Domain of unknown function DUF21; E=1.8e-17.
       0.440
RB6042
Hemolysin protein; Best DB hits: BLAST: pir:G82309; probable hemolysin VC0558 [imported] - Vibrio cholerae; E=6e-19 gb:AAG20419.1; (AE005114) hemolysin protein; Hlp [Halobacterium; E=1e-16 ddbj:BAA16497.1; (D90888) similar to [SwissProt Accession Number; E=4e-16 COG: VC0558; COG1253 Uncharacterized CBS domain-containing proteins; E=6e-20 PFAM: PF01595; Domain of unknown function DUF2; E=0.00013 PF00571; CBS domain; E=0.0037.
       0.440
RB6045
Hypothetical protein-transmembrane prediction.
       0.440
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.