STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
moxR-5MoxR protein; PMID: 8997703 best DB hits: BLAST: pir:H70121; methanol dehydrogenase regulator (moxR) homolog - Lyme; E=3e-71 embl:CAA65298.1; (X96434) moxR [Borrelia burgdorferi] -----; E=9e-69 ddbj:BAB04450.1; (AP001509) BH0731~unknown conserved protein; E=3e-67 COG: BB0176; COG0714 MoxR-like ATPases; E=3e-72 PFAM: PF00004; ATPase family associated with va; E=0.0005 PF01078; Magnesium chelatase, subunit Chl; E=1e-12. (367 aa)    
Predicted Functional Partners:
RB6057
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00432; Prenyltransferase and squalene ox; E=0.69.
       0.577
RB1800
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=3e-14 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=8e-12 pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=7e-11 COG: VCA0174; COG1721 Uncharacterized ACR; E=3e-15 PFAM: PF01882; Protein of unknown function DUF58; E=1.4e-24.
  
    0.562
RB1516
Conserved hypothetical protein; PMID: 9403685 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=5e-14 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-11 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=3e-09 COG: BB0175; COG1721 Uncharacterized ACR; E=4e-15 PFAM: PF01882; Protein of unknown function DUF; E=8.2e-16.
 
    0.550
RB6053
Hypothetical protein-putative related to sulfatases; PMID: 12024217 best DB hits: PFAM: PF00884; Sulfatase; E=0.34.
       0.542
RB6054
Hypothetical protein-transmembrane prediction.
       0.542
RB6446
Conserved hypothetical protein; PMID: 9403685 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=2e-13 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=3e-11 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=1e-09 COG: BB0175; COG1721 Uncharacterized ACR; E=2e-14 APE1031; COG2425 Uncharacterized ACR; E=0.002 VNG0222C; COG1721 Uncharacterized ACR; E=0.008 PFAM: PF01882; Protein of unknown function DUF58; E=5.9e-18.
  
    0.530
RB8988
Best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=2e-13 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-12 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=2e-11 COG: BB0175; COG1721 Uncharacterized ACR; E=2e-14 PFAM: PF01882; Protein of unknown function DUF; E=6.5e-23.
  
    0.514
RB498
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=7e-17 pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=5e-12 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=2e-09 COG: Rv1480; COG1721 Uncharacterized ACR; E=7e-18 PFAM: PF01882; Protein of unknown function DU; E=1.3e-17.
  
    0.496
RB8174
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=2e-17 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=1e-12 pir:H83261; hypothetical protein PA3071 [imported] - Pseudomonas; E=2e-12 COG: Rv1480; COG1721 Uncharacterized ACR; E=1e-18 PFAM: PF01882; Protein of unknown function DUF58; E=8.4e-16.
  
    0.490
RB6051
Hypothetical protein-transmembrane prediction.
       0.479
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.