STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smcChromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1234 aa)    
Predicted Functional Partners:
ypuG
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.858
RB11587
Conserved hypothetical protein-putative transcriptional regulator; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 
 
 0.792
RB6067
Hypothetical protein-transmembrane prediction.
       0.773
RB6962
Conserved hypothetical protein-putative transcriptional regulator; Best DB hits: BLAST: pir:T36872; hypothetical protein SCI51.09c - Streptomyces coelicolor; E=4e-08 swissprot:P35155; YPUH_BACSU HYPOTHETICAL 22.0 KD PROTEIN IN; E=3e-07 pir:D71320; conserved hypothetical protein TP0458 - syphilis; E=5e-06 COG: BS_ypuH; COG1386 Predicted transcriptional regulator containing the; E=2e-08.
 
 
 
 0.719
corA
Magnesium/cobalt transport protein; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.628
RB6070
Restriction endonuclease; PMID: 9358175 best DB hits: BLAST: pir:S74697; hypothetical protein sll1193 - Synechocystis sp. (strain; E=3e-23 pir:T36856; hypothetical protein SCI5.03 - Streptomyces coelicolor; E=4e-17 pir:H82621; hypothetical protein XF1912 [imported] - Xylella; E=5e-17 COG: sll1193; COG1403 Restriction endonuclease; E=3e-24 PFAM: PF01844; HNH endonuclease; E=9.6e-11.
       0.523
RB6071
Hypothetical protein.
       0.431
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.