STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6075Putative secreted protein; PMID: 8843436 best DB hits: BLAST: ddbj:BAB06714.1; (AP001517) BH2995~unknown conserved protein; E=2e-95 embl:CAB71916.1; (AL138668) putative secreted protein; E=2e-90 embl:CAB71258.1; (AL138598) putative secreted protein.; E=1e-79 PFAM: PF02871; NAD/NADP octopine/nopaline dehy; E=0.52 PF00070; Pyridine nucleotide-disulphide; E=0.0043 PF02254; KTN NAD-binding domain; E=0.011. (520 aa)    
Predicted Functional Partners:
RB492
Probable calmodulin; Best DB hits: BLAST: gb:AAD34246.1; AF084398_1 (AF084398) calmodulin mutant SYNCAM46; E=0.002 gb:AAD34433.1; AF084449_1 (AF084449) calmodulin mutant SYNCAM26; E=0.002 prf:1003191A; calmodulin [Oryctolagus cuniculus]; E=0.002 PFAM: PF00036; EF hand; E=0.034 PF00395; S-layer homology domain; E=0.44.
    
 
 0.841
RB6073
Hypothetical protein.
       0.572
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
 
 0.517
czcD
Cation efflux system protein; PMID: 2678100 best DB hits: BLAST: pir:G72363; cation efflux system protein - Thermotoga maritima; E=4e-37 pir:H71078; probable cation efflux system protein czcD - Pyrococcus; E=4e-37 pir:C83595; probable cation efflux system protein PA0397 [imported]; E=9e-37 COG: TM0538; COG1230 Co/Zn/Cd efflux system component; E=4e-38 Rv2025c; COG0053 Predicted Co/Zn/Cd cation transporters; E=2e-10 PA1297; COG1230 Co/Zn/Cd efflux system component; E=4e-10 PFAM: PF01545; Cation efflux family; E=1.7e-65.
  
    0.503
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
  
 
 0.498
RB6078
PMID: 9308178 best DB hits: BLAST: swissprot:O05409; SIGZ_BACSU RNA POLYMERASE SIGMA FACTOR SIGZ; E=1e-31 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=6e-13 pir:C69826; RNA polymerase ECF-type sigma factor homolog yhdM -; E=8e-12 COG: BS_sigZ; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-32 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=7.3e-15.
       0.497
RB993
3-beta-hydroxysteroid dehydrogenase; PMID: 8547173 best DB hits: BLAST: pir:E82632; NAD(P)H steroid dehydrogenase XF1825 [imported] -; E=7e-54 pir:H83099; probable oxidoreductase PA4361 [imported] - Pseudomonas; E=2e-39 gb:AAG11424.1; AC015449_6 (AC015449) Similar to steriod; E=3e-34 COG: XF1825; COG0451 Nucleoside-diphosphate-sugar epimerases; E=7e-55 BH1108; COG1087 UDP-glucose 4-epimerase; E=1e-08 Rv3464; COG1088 dTDP-D-glucose 4,6-dehydratase; E=1e-07 PFAM: PF01370; NAD dependent epimerase/dehydrat; E=0.087 PF00106; short chain dehydrogenase; E=0.038 PF00235; Profilin; E=0.88.
  
 
   0.426
RB10446
Beta keto-acyl synthase; Best DB hits: BLAST: ddbj:BAA89384.1; (AB025342) ORF10 [Moritella marina]; E=3e-37 pir:T30185; hypothetical protein 7 - Shewanella sp ----- gb:; E=3e-36 pir:T37057; probable multi-domain beta keto-acyl synthase -; E=8e-35 COG: DR1945; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=3e-17 Rv3391_1; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-14 BH2492; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=2e-13 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=7.7e-09 PF02801; Beta-ketoacyl synthase, C-ter; E=7.6e-61 PF00109; Beta-ketoacyl syntha [...]
  
  
 0.408
RB8921
Putative membrane protein-putative a lipopolysaccharide biosynthesis acyltransferase; Best DB hits: BLAST: embl:CAB69781.1; (AL137187) putative membrane protein; E=2e-18 pir:T36253; probable membrane protein - Streptomyces coelicolor; E=1e-16 pir:T21781; hypothetical protein F35E2.6 - Caenorhabditis elegans; E=4e-06 COG: BS_yrhL; COG1835 Predicted acyltransferases; E=1e-05.
  
     0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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