STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6095Conserved hypothetical protein; PMID: 10484179 best DB hits: BLAST: ddbj:BAB04212.1; (AP001508) BH0493~unknown [Bacillus halodurans]; E=4e-12 gb:AAF77061.1; AF266466_3 (AF266466) putative hexuronic acid; E=0.003 gb:AAK05726.1; AE006393_5 (AE006393) glucuronate isomerase (EC; E=0.57. (655 aa)    
Predicted Functional Partners:
RB4129
Conserved hypothetical protein; PMID: 99287316 best DB hits: BLAST: pir:C72377; hypothetical protein TM0440 - Thermotoga maritima; E=1e-22.
    
 0.917
RB6100
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02368; Bacterial Ig-like domain (group; E=0.091.
 
     0.869
RB5968
Best DB hits: BLAST: pir:B72234; RNA polymerase sigma-E factor - Thermotoga maritima; E=0.42 gb:AAC14121.1; (AF056199) sigma factor E [Streptomyces; E=0.80 PFAM: PF00140; Sigma-70 factor; E=4.9e-05 PF00196; Bacterial regulatory proteins,; E=0.19.
  
     0.773
RB6045
Hypothetical protein-transmembrane prediction.
  
     0.760
RB2247
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG19229.1; (AE005019) Vng0754c [Halobacterium sp. NRC-1]; E=9e-06 gb:AAF75279.1; AF265353_1 (AF265353) byssal protein Dpfp1; E=0.21 ddbj:BAA94345.1; (AB035520) parchorin [Oryctolagus cuniculus]; E=0.50 PFAM: PF00089; Trypsin; E=0.58.
  
     0.749
RB1793
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.098.
  
     0.748
RB1508
Probable n-terminal acetyltransferase; PMID: 3106324 best DB hits: BLAST: pir:D75017; n-terminal acetyltransferase PAB1098 - Pyrococcus abyssi; E=4e-05 pir:A71455; probable acetyltransferase - Pyrococcus horikoshii; E=2e-04 embl:CAA51674.1; (X73149) Nourseothricin acetyltransferase; E=3e-04 COG: PAB1098; COG0456 Acetyltransferases; E=4e-06 BS_yobR; COG0454 Histone acetyltransferase HPA2 and related; E=1e-04 PA4678; COG0456 Acetyltransferases; E=5e-04 PFAM: PF00583; Acetyltransferase (GNAT) family; E=3.8e-21.
  
     0.742
flgI-2
Best DB hits: BLAST: pir:G72242; flagellar P-ring protein - Thermotoga maritima (strain; E=9e-07 gb:AAG09321.1; (AF178757) CpcF [Nostoc sp. PCC 7120]; E=0.10 pir:T44927; hypothetical protein orf398 [imported] - Anabaena sp; E=0.47 COG: TM1539; COG1706 Flagellar basal-body P-ring protein; E=9e-08.
  
     0.742
RB6097
Hypothetical protein.
       0.741
RB6098
Hypothetical protein.
       0.741
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.