STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6123Similar to protein disulfide-isomerase; PMID: 8760355 best DB hits: BLAST: pir:T34092; hypothetical protein C07A12.4 - Caenorhabditis elegans; E=0.071 pir:S71862; protein disulfide-isomerase (EC 5.3.4.1) precursor -; E=0.071 swissprot:P09103; PDI_MOUSE PROTEIN DISULFIDE ISOMERASE PRECURSOR; E=0.079. (764 aa)    
Predicted Functional Partners:
ribD
PMID: 9068650 best DB hits: BLAST: pir:T50546; riboflavin bifunctional biosynthesis protein ribG; E=2e-56 swissprot:P50853; RIBD_ACTPL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD; E=2e-56 ddbj:BAB05273.1; (AP001512) riboflavin specific; E=9e-52 COG: ribD_1; COG0117 Pyrimidine deaminase; E=1e-28 BH1554_2; COG1985 Pyrimidine reductase, riboflavin biosynthesis; E=6e-21 CPn0871_1; COG0117 Pyrimidine deaminase; E=1e-20 PFAM: PF00383; Cytidine and deoxycytidylate de; E=1.5e-31 PF01872; RibD C-terminal domain; E=4e-33.
   
   0.792
tolB
Probable TolB protein; PMID: 8955385 best DB hits: BLAST: embl:CAB60199.1; (AJ250881) P1a6 protein [Haemonchus contortus]; E=5e-29 gb:AAB01192.1; (U55864) apical gut membrane polyprotein; E=8e-29 pir:T19607; hypothetical protein C31C9.1 - Caenorhabditis elegans; E=8e-27 COG: XF0820; COG2234 Predicted aminopeptidases; E=2e-11 RP302; COG0823 Periplasmic component of the Tol biopolymer transport; E=1e-07 PA0972; COG0823 Periplasmic component of the Tol biopolymer; E=2e-06 PFAM: PF02787; Carbamoyl-phosphate synthetase; E=0.2 PF01546; Peptidase family M20/M25/M40; E=0.61 PF00595; PDZ domain [...]
   
  0.570
RB6119
Hypothetical protein.
       0.559
RB6122
Hypothetical protein.
       0.559
murE
Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; PMID: 8436954 best DB hits: BLAST: swissprot:Q03523; MURE_BACSU; E=2e-10 ddbj:BAB06290.1; (AP001515); E=4e-09 swissprot:O86491; MURE_STAAU; E=7e-09 COG: BS_murE; COG0769 UDP-N-acetylmuramyl tripeptide synthase; E=2e-11 XF0794; COG0770 UDP-N-acetylmuramyl pentapeptide synthase; E=1e-09 CPn0418; COG0769 UDP-N-acetylmuramyl tripeptide synthase; E=2e-06 PFAM: PF01225; Mur ligase family, catalytic domai; E=0.0033 PF00023; Ank repeat; E=0.019.
       0.509
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.