STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6145Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=9e-10 pir:A75265; ferric enterobactin esterase-related protein -; E=4e-05 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=0.004 COG: PA2451; COG2382 Enterochelin esterase and related enzymes; E=9e-11. (322 aa)    
Predicted Functional Partners:
aroB-2
3-dehydroquinate synthase; PMID: 10910347 best DB hits: BLAST: pir:C82693; 3-dehydroquinate synthase XF1334 [imported] - Xylella; E=7e-24 swissprot:P34002; AROB_PSEAE 3-DEHYDROQUINATE SYNTHASE -----; E=1e-21 ddbj:BAB10417.1; (AB011474) 3-dehydroquinate synthase-like; E=6e-21 COG: XF1334; COG0337 3-dehydroquinate synthetase; E=6e-25 PFAM: PF01761; 3-dehydroquinate synthase; E=2.9e-29.
       0.773
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
  
 0.737
RB6148
Hypothetical protein; Best DB hits: BLAST: gb:AAB51777.1; (U69571) ORF993; upstream of trxA gene; E=0.81.
       0.705
RB6658
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.667
RB2763
Hypothetical protein-signal peptide prediction.
  
     0.664
RB6629
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.28.
  
     0.660
RB5066
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAF53435.1; (AE003646) ck gene product [Drosophila melanogaster]; E=0.86.
  
     0.650
RB7033
Similar to filamin; PMID: 8244995 best DB hits: BLAST: pir:A49551; filamin, Muller cell - chicken ----- gb:; E=0.77.
  
     0.649
RB7030
Hypothetical protein.
  
     0.648
RB2764
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.647
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.