STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6163Hypothetical protein. (156 aa)    
Predicted Functional Partners:
RB6162
Hypothetical protein.
       0.572
y4qJ-3
Putative integrase/recombinase; PMID: 9163424 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN PUTATIVE INTEGRASERECOMBINASE Y4QK; E=7e-25 swissprot:P55429; Y4EF_RHISN PUTATIVE INTEGRASERECOMBINASE Y4EF; E=5e-24 prf:2115270D; integrase [Weeksella zoohelcum]; E=4e-18 COG: PAB0255; COG0582 Integrase; E=1e-15 PFAM: PF00589; Phage integrase family; E=2.6e-19; Belongs to the 'phage' integrase family.
       0.408
y4qJ-4
Putative transposase; PMID: 9163424 best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN PUTATIVE TRANSPOSASE Y4QJ -----; E=7e-39 prf:2115270C; transposase [Weeksella zoohelcum]; E=6e-35 pir:S23782; transposase tnpA (insertion sequence IS91) - Escherichia; E=5e-14.
       0.408
RB6168
Hypothetical protein.
       0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.