STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6170Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:F83333; hypothetical protein PA2504 [imported] - Pseudomonas; E=8e-11 pir:C81172; hypothetical protein NMB0685 [imported] - Neisseria; E=1e-10 pir:B81935; hypothetical protein NMA0887 [imported] - Neisseria; E=3e-10. (184 aa)    
Predicted Functional Partners:
perA
Peroxidase/catalase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
  
    0.577
RB6171
Putative integrase/recombinase; PMID: 9163424 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN PUTATIVE INTEGRASERECOMBINASE Y4QK; E=3e-35 prf:2115270D; integrase [Weeksella zoohelcum]; E=1e-34 swissprot:P55429; Y4EF_RHISN PUTATIVE INTEGRASERECOMBINASE Y4EF; E=1e-33 COG: MTH893; COG0582 Integrase; E=9e-29 PFAM: PF00589; Phage integrase family; E=4.2e-40.
       0.572
RB5189
Hypothetical protein-transmembrane prediction.
  
     0.472
RB7341
Similar to surface-associated protein cshA precursor; PMID: 93125117 PMID: 1479886 PMID: 7891560 best DB hits: BLAST: pir:S61441; surface-associated protein cshA precursor - Streptococcus; E=0.006 PFAM: PF00404; Dockerin type I repeat; E=0.039.
  
     0.446
RB3077
Hypothetical protein-putative cyclic nucleotide-binding protein.
  
    0.432
RB8928
Conserved hypothetical protein-putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Best DB hits: BLAST: pir:S74905; hypothetical protein slr2060 - Synechocystis sp. (strain; E=4e-10 ddbj:BAB05354.1; (AP001512) BH1635~unknown conserved protein; E=0.004 gb:AAF73599.1; (AE002342) 1-acyl-sn-glycerol-3-phosphate; E=0.004 COG: BH1635; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; E=4e-04 PFAM: PF01553; Acyltransferase; E=2.7e-09.
  
     0.420
RB7321
Hypothetical protein; Best DB hits: BLAST: ddbj:BAB10333.1; (AB016872) gene_id:K21P3.2~unknown protein; E=0.089 PFAM: PF00028; Cadherin domain; E=0.14 PF00797; N-acetyltransferase; E=0.3 PF00404; Dockerin type I repeat; E=0.045.
  
     0.409
RB12468
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00520; Ion transport protein; E=1.8e-05 PF01578; Cytochrome C assembly protein; E=0.81.
  
     0.407
RB1739
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: pir:A70710; hypothetical protein Rv0790c - Mycobacterium; E=8e-07 pir:A69206; hypothetical protein MTH795 - Methanobacterium; E=2e-05 pir:D70818; hypothetical protein Rv1673c - Mycobacterium; E=2e-05 COG: Rv0790c; COG1305 Transglutaminase-like enzymes, putative cysteine; E=8e-08 PFAM: PF01841; Transglutaminase-like superfam; E=9e-08.
  
     0.406
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.