STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6188Hypothetical protein. (68 aa)    
Predicted Functional Partners:
RB6189
Hypothetical protein.
       0.768
RB6190
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAC24059.1; (AL512981) Hypothetical [Sulfolobus; E=0.17.
       0.768
RB6193
Hypothetical protein.
       0.768
RB6194
Hypothetical protein.
       0.768
RB6185
Similar to L-sorbosone dehydrogenase; PMID: 10567266 best DB hits: BLAST: pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=0.19 pir:C75617; probable oxidoreductase - Deinococcus radiodurans; E=0.35 embl:CAA53052.1; (X75304) giantin [Homo sapiens]; E=0.78 PFAM: PF00034; Cytochrome c; E=0.017 PF02736; Myosin N-terminal SH3-like domai; E=0.62.
       0.550
RB6196
Choline sulfatase; PMID: 9736747 best DB hits: BLAST: gb:AAC13371.1; (U39940) choline sulfatase [Sinorhizobium; E=4e-30 swissprot:O69787; BETC_RHIME CHOLINE-SULFATASE; E=4e-30 gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=2e-28 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=4e-23 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.003 PFAM: PF00884; Sulfatase; E=7.4e-20.
       0.538
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.