STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6289Conserved hypothetical protein-putative hydrolase; Best DB hits: BLAST: pir:T45716; hypothetical protein F1P2.110 - Arabidopsis thaliana; E=4e-07 gb:AAG10612.1; AC008030_12 (AC008030) Unknown protein [Arabidopsis; E=1e-05 gb:AAD10154.1; (AC005917) putative esterase [Arabidopsis; E=1e-05 COG: XF1829; COG2945 Predicted hydrolase of the alpha/beta superfamily; E=6e-06 CT149; COG1073 Hydrolases of the alpha/beta superfamily; E=0.008 PFAM: PF00561; alpha/beta hydrolase fold; E=0.0058 PF00293; MutT-like domain; E=0.7. (242 aa)    
Predicted Functional Partners:
RB6291
Conserved hypothetical protein; PMID: 10484179 best DB hits: BLAST: swissprot:P54466; YQFA_BACSU HYPOTHETICAL 35.6 KD PROTEIN IN; E=7e-57 embl:CAA12151.1; (AJ224829) ORF1 [Bacillus megaterium]; E=2e-54 ddbj:BAB05076.1; (AP001511) BH1357~unknown conserved protein in; E=3e-54.
       0.496
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.