STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6305PMID: 9537320 best DB hits: BLAST: pir:G70463; dolichol-phosphate mannosyltransferase - Aquifex; E=3e-52 pir:D83201; probable glycosyl transferase PA3553 [imported] -; E=3e-37 gb:AAG57385.1; AE005458_2 (AE005458) putative sugar transferase; E=2e-36 COG: aq_1899; COG0463 Glycosyltransferases involved in cell wall; E=3e-53 yfbF; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=3e-37 sll0501; COG0463 Glycosyltransferases involved in cell wall; E=1e-23 PFAM: PF00535; Glycosyl transferase; E=1.1e-24. (437 aa)    
Predicted Functional Partners:
RB6307
Hypothetical protein.
       0.794
RB1637
Putative glycosyl transferase; PMID: 8843436 best DB hits: BLAST: embl:CAB61668.1; (AL133213) putative glycosyl transferase; E=4e-32 embl:CAC15463.1; (AJ294477) putative polyprenol phosphate; E=7e-29 embl:CAB11300.1; (Z98604) hypothetical protein MLCB2052.02; E=1e-28 COG: Rv2051c_2; COG0463 Glycosyltransferases involved in cell wall; E=2e-29 PFAM: PF00535; Glycosyl transferase; E=1.6e-19.
  
     0.746
RB6310
Hypothetical protein.
       0.705
RB6314
Hypothetical protein.
       0.553
RB6302
ADP-ribose pyrophosphatase; PMID: 10360571 best DB hits: BLAST: pir:H72286; conserved hypothetical protein - Thermotoga maritima; E=5e-22 swissprot:P54570; ADPP_BACSU ADP-RIBOSE PYROPHOSPHATASE; E=3e-21 ddbj:BAB05243.1; (AP001512) BH1524~unknown conserved protein; E=3e-19 COG: TM1181; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=5e-23 BS_yqkG; COG0494 NTP pyrophosphohydrolases including oxidative; E=3e-22 BH1524; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=3e-20 PFAM: PF00293; MutT-like domain; E=3.7e-13.
       0.528
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
 
  
 0.508
RB6624
PMID: 10952301 best DB hits: BLAST: pir:D82262; probable capsular polysaccharide biosynthesis; E=3e-87 gb:AAG57107.1; AE005430_7 (AE005430) putative colanic acid; E=4e-82 swissprot:P71241; WCAJ_ECOLI PUTATIVE COLANIC BIOSYNTHESIS; E=5e-82 COG: VC0934; COG2148 Sugar transferases involved in lipopolysaccharide; E=3e-88 PFAM: PF02397; Bacterial sugar transferase; E=0.25.
  
  
 0.441
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.